Sequence
atgc intronic sequence ATGC exonic sequenceCTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGGgtaataaactcagctccaagtcttgagaattgtccatgaaatctttctaaggacggatttatttgtttttgcttgtaaaacattccttgtatccaggtatggatgtgagagtgttggttgattcccatattctttttggtccag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G46100.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G46100.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 3
CTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGGgtaataaactcagctccaagt---cttgagaattgtccatgaaatctttctaaggacggatttatttgtttttgcttgtaaaacattcct-tgtatccaggtatggatgtgagagtgt-tggttgattcccatattctttttggtccag----------
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CTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaa--aattcatttttatgcatattttagattttcctatatttacagttttgatgtaaa---gtctatgtctaatagttaaactttaatctacataagataattcttttgtatgtgaatgccaaattctcattttcatgtctgttctttaatttttag
upper sequence: AT3G46100.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0040g01360.t01 (Vitis vinifera), 5'ss of exon 3
CTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGGgtaataaa--------------------------ctcagct--ccaagtcttg-agaattgtccatgaaatct-----ttctaaggacg--gatttatttgtttttgcttgtaaaacattccttgtatccaggtatggatgtgagagtgttggttgattcccatattctttttggtccag
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CTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGGgtactaagatactagttcttctgtatttcattgcttctgctttctgaatgatgtagtgtcaactaaaaaatttgactgttcaaagaattttggttcattcatttatctatttataa---tttttgtatccaggtacagatgccagaat-----ttgatctccatgtttttttctgtccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072226|gb|DR367983.1|DR367983EST: TTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGG AAAATCTGTTTCCCTTCCATTGAAGTGGTTTG
genomic: TTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGGgtaataaact ... tttggtccagAAAATCTGTTTCCCTTCCATTGAAGTGGTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGGgtaataaactcagctccaagtcttgagaattgtccatgaaatctttctaaggacggatttatttgtttttgcttgtaaaacattccttgtatccaggtatggatgtgagagtgttggttgattcccatattctttttggtccag
- - - - - - - - - - - - - - - - - - - - - - - - GAGCTT