Sequence
atgc intronic sequence ATGC exonic sequenceGGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTCACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGgttagtcccttattcctttttatttactcgtttctctcctttatttctttcattcaaaatgtcaccctttttaatgggtctaagtgtggacctgtgattt...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G45780.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G45780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G40550.1 (Glycine max), 5'ss of exon 2
GGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTCACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGgttagtcccttattcctttttatttactcgtttctc-tcctttatttctttcattca---aaatgtcaccctttttaatgggtctaagtgtggacctgtgattt
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GAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTTCTCAAATTTATTGGgtaag-ctaacatttcatttaattcatcaatgtctaattttggattaccatcgtgtgattatgtgttgttaggtttgttaattgttattatc-atctttagc--
upper sequence: AT3G45780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 2
GGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTCACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGgttagtcccttattcctttttatttactcgtttctc-tcctttatttctttcattcaaaatgtcaccctttttaatgggtctaagtgtggacctgtgattt-----
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GAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTGCTCAAATTTATTGGgtaag-ctaacatttcatttaattcatcaatgtctaattttggattaccatcgtgtga----ttatgtgttgttaggtttgttattatc-atctttaattagctta
upper sequence: AT3G45780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 4
GGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTCACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGgttagtcccttattcctttttatttactcgtttctctcctttatttctttcattcaaaatgtcaccctttttaatgggtctaagtgtggacctgtgattt------
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GAAGGTTACTCAATTACAAGAAGGATGGCACCCCCTTTTGGAACCTTCTCACTATTGCCCCTATCAAGGACGACGATGGAAGAGTCCTCAAATTCATCGGgtatgt------taccttactacacactttctttatgctcctcattcacttgtttatgatttcttataattttatgataaaatattttttcttttgagttttttaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125112706|gb|EL163760.1|EL163760EST: CCTCAAATTTATCGG AATGCAAGTGGAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAGGCTTT
genomic: CCTCAAATTTATCGGgttagtccct ... tttggaccagAATGCAAGTGGAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAGGCTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTCACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGgttagtcccttattcctttttatttactcgtttctctcctttatttctttcattcaaaatgtcaccctttttaatgggtctaagtgtggacctgtgattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccttt