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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGGgtaatctgatatgaatacattgattgtttttatttgatcatcatgtaaagttttggtgtttgagtgatcaccaaaaaactctttggttattgattttcatctgtttgttggttttttctttgcgtggaaccttttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G44890.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125141436|gb|EL178937.1|EL178937
EST:     ACGAACGGATTGAGGCAGAGAAGCAAAGG                         GTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCAAACCGTTGGTGCT
genomic: ACGAACGGATTGAGGCAGAGAAGCAAAGGgtaatctgat ... ttttttgcagGTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCAAACCGTTGGTGCT
EST: gi|164186041|gb|ES012177.1|ES012177
EST:     GGAATTGAAGATGGAAGACGAACGGATTAGAGGCAGAGAAGCAAAGG                         GTGAAAGAAGAGGC
genomic: GGAATTGAAGATGGAAGACGAACGGATT-GAGGCAGAGAAGCAAAGGgtaatctgat ... ttttttgcagGTGAAAGAAGAGGC
EST: gi|124764026|gb|EH854156.1|EH854156
EST:     TCAAGGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGG                         GTGAAAGAAGAGGCACAACAA
genomic: TCAAGGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGGgtaatctgat ... ttttttgcagGTGAAAGAAGAGGCACAACAA
EST: gi|164210324|gb|ES091270.1|ES091270
EST:     GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGG                         GTGAAAGA-GAGGC
genomic: GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGGgtaatctgat ... ttttttgcagGTGAAAGAAGAGGC
EST: gi|164213223|gb|ES085174.1|ES085174
EST:     GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGG                         GTGAAAGAAGAGGC
genomic: GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGGgtaatctgat ... ttttttgcagGTGAAAGAAGAGGC
EST: gi|164154288|gb|ES105559.1|ES105559
EST:     AACGGATTGAGGCAGAGAAGCAAAGG                         GTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCAAACCGTTGGTGCT
genomic: AACGGATTGAGGCAGAGAAGCAAAGGgtaatctgat ... ttttttgcagGTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCAAACCGTTGGTGCT
EST: gi|124837220|gb|EH921659.1|EH921659
EST:     GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGG                         GTGAAAGAAGAGGCACAAC
genomic: GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGGgtaatctgat ... ttttttgcagGTGAAAGAAGAGGCACAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGGgtaatctgatatgaatacattgattgtttttatttgatcatcatgtaaagttttggtgtttgagtgatcaccaaaaaactctttggttattgattttcatctgtttgttggttttttctttgcgtggaaccttttttgcag

- - TTGAAG
- -  TGAAGA
- - -  AAGATG
- - - -  GATGGA
- - - - -  TGGAAG
- - - - - - GGAAGA
- - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - -  GCAAAG