1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCCTGCACGGCTTCCTTCTTTCCACACTTGTGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacatttgcactttcgatttggagaaactactgttttacttggtggtatgtctacgggattcttttctgataatacttttgtcag
species | Arabidopsis thaliana |
transcript | AT3G27820.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGAAATGGTACAAGGATCATG GAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGAEST: gi|125004978|gb|EL077247.1|EL077247
genomic: CCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGA
EST: TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATG GAATTGAATTGGTACTTGGAAACTCGTGTTAAGTCCGTTGATGTGAGGAGGEST: gi|124994165|gb|EL066434.1|EL066434
genomic: TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAA-CTCGTGTTAAGTCCGTTGATGTGAGGAGG
EST: TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATG GAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGEST: gi|125255298|gb|EL269383.1|EL269383
genomic: TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTG
EST: AGAAGCTTACACCGAAATGGTACAAGGATCATG GAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGA
genomic: AGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTGCACGGCTTCCTTCTTTCCACACTTGTGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacatttgcactttcgatttggagaaactactgttttacttggtggtatgtctacgggattcttttctgataatacttttgtcag
- - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC