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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACATTCACTTTGATAGCAATCTACTTCGGGgtatgttttgatttttgatgttgtgaatatgtatatggttatagtcaagtttgtttgaatgtttgttgtcacttgtgtgttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT3G27770.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124758262|gb|EH848392.1|EH848392
EST:     GTGGACATTCACGTTTGATAGCAATCTACTTCGGG                         ATGGGATCATTGCTTTCAATTTATGGATGTTTACAATACAAGAAGCAAGGG
genomic: GTGGACATTCAC-TTTGATAGCAATCTACTTCGGGgtatgttttg ... tgttgtgtagATGGGATCATTGCTTTCAATTTATGGATGTTTACAATACAAGAAGCAAGGG
EST: gi|125312869|gb|EL326954.1|EL326954
EST:     GTGGACATTCACTTTGATAGCAATCTACTTCGGG                         ATGGGATCATTGCTTTCAATTTATGG
genomic: GTGGACATTCACTTTGATAGCAATCTACTTCGGGgtatgttttg ... tgttgtgtagATGGGATCATTGCTTTCAATTTATGG
EST: gi|124971389|gb|EL045158.1|EL045158
EST:     GTGGACATTCACTTTGATAGCAATCTACTTCGGG                         ATGGGATCATTGCTTTCAATTTATGGATGTTTACAATACAAGAAGCAAGGG
genomic: GTGGACATTCACTTTGATAGCAATCTACTTCGGGgtatgttttg ... tgttgtgtagATGGGATCATTGCTTTCAATTTATGGATGTTTACAATACAAGAAGCAAGGG