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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTAGACATTCGTTTGGCTGTTGGTTTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCGCGATCTTAAACCAGgtaaatggaaagaaatctaaatccgtgacttctaagtatgtatggaaagcttatgatcttattgcatctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G27560.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27560.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g38080.1 (Oryza sativa), 5'ss of exon 4
CGTTTAGACATTCGTTTGGCTGTTGGTTTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCGCGATCTTAAACCAGgtaaatggaaagaaatctaaatccgtgacttctaagtatgtatggaaagcttatgatcttattgcatctgcag--------------------------------
 |  | ||   |||| | |||||||| |||||  | || |||||||| || ||||||||||| ||| | ||||  |||||||| || ||||||||||| |||||   ||  |  || |  |  | ||  | ||   |  | ||  | |  |  ||   || |   ||| | |                                 
AGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGgtaa---gattgctatttggaaacctggttgcttcatgggcatttaca--tggtggatttctgcaatccggaataataactattcattagttcatatacaccatg

upper sequence: AT3G27560.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0066g00370.t01 (Vitis vinifera), 5'ss of exon 3
CGTTTAGACATTCGTTTGGCTGTTGGTTTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCGCGATCTTAAACCAGgta--aatggaaagaaatctaaatccgtgactt-ctaagtatgtatggaaagcttatgatcttattgcatctgcag--------------------------
 | || || |      |||| ||||||||||| || ||||||||||| ||||||||||| |||||||| || || ||||| || || || || ||||| ||||  | |  |     || ||  | | ||  |   ||| || | ||    || |  |||  |  | |||| |   |                          
TGCTTGGATACAAAGGTGGCAGTTGGTTTTGCACTGGACATTGCTCGAGCAATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttcattatcatttaccttcttgtttggttaattaagcatattgagtt--tgaattagtggcattttgtgagaatttcctacaaacagttgcatag