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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCTCCAAGATACAGAGACTCTGTTCGAGCTATAACACCTGGATTGCCTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAGgtttgttctcgtgctttttttttgtcataacaatggttttgatgctaccatttactgaaaatttgatgttcgaattattccgtgaatgattccttgtttag

Basic information

species Arabidopsis thaliana
transcript AT3G27090.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27090.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G011923_T01 (Zea mays), 5'ss of exon 3
TTTACCTCCAAGATACAGAGACTCTGTTCGAGCTATAACACCTGGATTGCCTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAGgtttgttctcgtgctttttttttgtcataacaatggtttt--gatgctaccattta-ctgaaaatttgatgttcgaattattccgtgaatgattccttgtttag
 || ||  || ||||  | || || || || || || || |||||  ||||||| || || || ||||||||||||||||||||||||||  | |||||||| |||  |  |    |||  |  |     | | |  | |  ||   |   |   |  ||    || |   |  | |  ||    |||   |    ||||    
ATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGCCTCTTTTCCTCTATAACTACACCACTCACCAGCTTCATGGGGTATTTGAGgtgtgtgattatctgatttcctcattcctgcgaagcctctctgaaattgttaaacagttgtttgttcgtcatatgtaagataggctgagctaaaaattgt----

upper sequence: AT3G27090.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 3
TTTACCTCCAAGATACAGAGACTCTGTTCGAGCTATAACACCTGGATTGCCTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAGgtttgttctcgtgctttttttttgtcataacaatggttttgatgctaccatttactgaaaatttgatgttcgaattattccgtgaatgattcc--ttgtttag
||| |||||||| ||  |||| |||||| | |||||||||||||| || ||  | |||||||| ||||| || ||||| ||||| |||||||| ||||||||  | | |  |  ||||       ||    |||  | ||| |||| |    | ||| |   |  |  ||    |    |  ||||  |||    |||| |  
TTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACCATTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGAGgtaagctattctagttttccaaccaca-gttaattatcttg-tgcttcagact-ctgcaggatgtaccttattttagggctatgaaatattgaaattgtctcc

upper sequence: AT3G27090.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0068g02040.t01 (Vitis vinifera), 5'ss of exon 3
TTTACCTCCAAGATACAGAGACTCTGTTCGAGCTATAACACCTGGATTGCCTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAGgtttgttctcgtgcttttttt-ttgtcataacaatggtt--ttgatgctaccatttactgaaaatttgatgttcgaattattccgtgaatgattccttgtttag
| ||||||||||||| |||||||||||||| ||||||||||| || || ||| ||||||| || |||||||| ||||||||  | |||||||| |||||||||||| ||         |||  |   | ||   |  ||  || || || |  | |  ||||  |||  | |  | |  |    |  |||| ||  ||  |   
TCTACCTCCAAGATATAGAGACTCTGTTCGGGCTATAACACCAGGCTTACCTTTGTTTCTCTATAACTACACTACTCACCAATTGCATGGTATTTTTGAGgtttgtacttccatacactttactactacaattcttattggtttattctgcagtgt-ttgaagctttagtatcagga--aacttgaaaatggttatttcctct-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125301288|gb|EL315373.1|EL315373
EST:     CTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAG                         GCTAACAACTTTTGGAG
genomic: CTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAGgtttgttctc ... ccttgtttagGC-AACAACTTTTGGAG
EST: gi|125237597|gb|EL251682.1|EL251682
EST:     CTTCATGGTATCTTTGAG                         GCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAA
genomic: CTTCATGGTATCTTTGAGgtttgttctc ... ccttgtttagGCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAA