Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAATCCGTCAAATCTTTCATGTCTAATCTCACTTCTCAGATCTCCGgtaattttacaaatgtcagacttttattcaatgattccttttgtgagagagtctgagacttgattttgtttttggtctaaag

Basic information

species Arabidopsis thaliana
transcript AT3G25980.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G37380.1 (Glycine max), 5'ss of exon 3
GAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAATCCGTCAAATCTTTCATGTCTAATCTCACTTCTCAGATCTCCGgtaatt----ttacaaatgtcagacttttattcaatgattccttttgtg----agagagtct-gagac-----ttgattttgtttttggtctaaag----
||||| |||||||| || ||||||||||| || || |||||||||| |||||||||    |||||| ||||  |  | ||||| ||| ||||| |||| ||||| |       | ||| |    ||| | ||       || |||  |     |||   | | ||||      |  ||||  || ||    |        
GAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGgtaactagcacccctaatttgtttcttctgttgtggttctcttttcatatcttagaagctgtagagaaaaatgtcaatttcattgtttacttgggaatta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125315601|gb|EL329686.1|EL329686
EST:     TGTCTAATCTCACTTCTCAGATCTCCG                         AATGGCTTGAAGCTGGGAAGTTGCAGAGAGTAGTGTTAGTGATTATGAGTA
genomic: TGTCTAATCTCACTTCTCAGATCTCCGgtaattttac ... tggtctaaagAATGGCTTGAAGCTGGGAAGTTGCAGAGAGTAGTGTTAGTGATTATGAGTA