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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactcaagtcacacaatgaatcag

Basic information

species Arabidopsis thaliana
transcript AT3G25520.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25520.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 5
-----------------------------------------ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactca--agtcacacaatgaat--cag
                                         |   | ||||||||||| |||||||| ||||| |||||||||| || |  | ||| |||  | ||  |   ||   ||||| || ||        ||  ||  | |   ||   | | |  ||  |||
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag

upper sequence: AT3G25520.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G06590.1 (Glycine max), 5'ss of exon 5
-----------------------------------------ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgat-----aataagaagcattgttattgtctctt--gttagaaactcaagtcacacaatgaatcag
                                         |   | ||||||||||| |||||||| ||||| |||||||||| || || |  || | |    ||  |     |   ||   | || ||   |     |  | ||   | |    ||  |   |   ||||
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatgagtctgctatgccttttgtgcccgagcgagtgcctttctttcagctgtgtaagctaatgagttgtatcttattttttttcag

upper sequence: AT3G25520.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G06580.1 (Glycine max), 5'ss of exon 5
-----------------------------------------ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgat-----aataagaagcattgttattgtctctt--gttagaaactcaagtcacacaatgaatcag
                                         |   | ||||||||||| |||||||| ||||| |||||||||| || || | ||| | |  | ||  |     |   ||   | || || | |     |  | ||   | |    ||  |   |   ||||
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164048039|gb|ES203625.1|ES203625
EST:     TGAGGGAAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TGAGGG-AAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124942201|gb|EL018488.1|EL018488
EST:     TTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|125270568|gb|EL284653.1|EL284653
EST:     TATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|164165069|gb|ES033006.1|ES033006
EST:     TGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124728441|gb|EH819843.1|EH819843
EST:     ATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: ATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|164072194|gb|EL982875.1|EL982875
EST:     CGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: CGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124949905|gb|EL025417.1|EL025417
EST:     TGTTGG-AATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATT
genomic: TGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATT
EST: gi|164006650|gb|EL971289.1|EL971289
EST:     AGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTCTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: AGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124910228|gb|EH984308.1|EH984308
EST:     AGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: AGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|125255909|gb|EL269994.1|EL269994
EST:     ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC