1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACAGTGTGAAGGATATATGTAAAGATGGTGGTGTGTTTAAGAAGATTCTTGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttcactctcttatggcctgctttagaggttggtgtgtgtttgattttgctaacggtgtttcctgtgtatttgttaattcag
species | Arabidopsis thaliana |
transcript | AT3G25230.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGGTGEST: gi|116475203|gb|EG517795.1|EG517795
genomic: CCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
EST: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATGEST: gi|116434999|gb|EG477591.1|EG477591
genomic: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
EST: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATGEST: gi|116475202|gb|EG517794.1|EG517794
genomic: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
EST: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATGEST: gi|116435001|gb|EG477593.1|EG477593
genomic: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
EST: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATGEST: gi|47828402|gb|CK118086.1|CK118086
genomic: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
EST: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATGEST: gi|86070354|gb|DR366111.1|DR366111
genomic: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
EST: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATGEST: gi|125002124|gb|EL074393.1|EL074393
genomic: TGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
EST: GCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTG TTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
genomic: GCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttc ... gttaattcagTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAGTGTGAAGGATATATGTAAAGATGGTGGTGTGTTTAAGAAGATTCTTGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtgtgttcactctcttatggcctgctttagaggttggtgtgtgtttgattttgctaacggtgtttcctgtgtatttgttaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA