1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTGTTGAGGCTTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtcccttttgtccttttcgtctgccttattattggaacaaaaggtgcttcatttactaaaattgtatttgtaagtttcctatgagttgatttgaat...
species | Arabidopsis thaliana |
transcript | AT3G24830.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|164107180|gb|ES018162.1|ES018162
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|116445907|gb|EG488499.1|EG488499
genomic: TCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|125247279|gb|EL261364.1|EL261364
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: AGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|124947899|gb|EL023702.1|EL023702
genomic: AGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: GTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|164144904|gb|ES072362.1|ES072362
genomic: GTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: GTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTG-ATGAGCGTAAGEST: gi|125061306|gb|EL129945.1|EL129945
genomic: GTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: CGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|164197613|gb|ES042609.1|ES042609
genomic: CGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTEST: gi|164138430|gb|ES066573.1|ES066573
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGT
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACEST: gi|86086265|gb|DR382024.1|DR382024
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCAC
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|86064135|gb|DR359892.1|DR359892
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|86078574|gb|DR374331.1|DR374331
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGTCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|86064139|gb|DR359896.1|DR359896
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|124929100|gb|EL006679.1|EL006679
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: ATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|47828738|gb|CK118422.1|CK118422
genomic: ATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|116443797|gb|EG486389.1|EG486389
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|124881466|gb|EH960368.1|EH960368
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGEST: gi|86081584|gb|DR377341.1|DR377341
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|164141779|gb|ES022026.1|ES022026
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGGGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|86064132|gb|DR359889.1|DR359889
genomic: TTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGAGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|164094527|gb|ES087070.1|ES087070
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGEST: gi|125196305|gb|EL211259.1|EL211259
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTG
EST: CTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAAEST: gi|125116906|gb|EL166259.1|EL166259
genomic: CTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAA-
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTEST: gi|86082055|gb|DR377814.1|DR377814
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGT
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|164031466|gb|ES000651.1|ES000651
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: GAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|86084454|gb|DR380213.1|DR380213
genomic: GAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|124983385|gb|EL056120.1|EL056120
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: GGGACGTTTGTCTTCTGAAGTTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGEST: gi|164132192|gb|ES143285.1|ES143285
genomic: GGGACGTTTGTCTTCTGAAG-TTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTG
EST: AACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGEST: gi|124778909|gb|EH868852.1|EH868852
genomic: AACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGEST: gi|164110774|gb|ES063675.1|ES063675
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGEST: gi|124902861|gb|EH976941.1|EH976941
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGEST: gi|124951708|gb|EL027049.1|EL027049
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGG
EST: AAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGACTTTGTATGAGCGTAAEST: gi|164069862|gb|ES127448.1|ES127448
genomic: AAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAG-CTTTGTATGAGCGTAA
EST: GGGACGTTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GNGCTTGAGGTGEST: gi|164133214|gb|ES007389.1|ES007389
genomic: GGGACGTTT-GTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTG
EST: GTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGEST: gi|86064133|gb|DR359890.1|DR359890
genomic: GTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAG
EST: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG GAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
genomic: TGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtccct ... gattttacagGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTGAGGCTTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGgtatgtcccttttgtccttttcgtctgccttattattggaacaaaaggtgcttcatttactaaaattgtatttgtaagtttcctatgagttgatttgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa