Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaacaattcaatttcattaattcctaaaagcttttaaagagttgttactaatttaaatactctgtttttgttattgtgttatgtatag

Basic information

species Arabidopsis thaliana
transcript AT3G24730.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24730.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0005g05620.t01 (Vitis vinifera), 5'ss of exon 4
AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaacaattcaatttcattaattcctaaaagcttttaaagagttgttactaatttaaatactctgtttttgttattgtgttatgtatag------------
 | ||||||||| ||||||||||| ||||| ||| | | |||||| ||||| ||||||||||| ||||||     |  ||| |  || ||   ||   ||      || | |   |||| | |  | || ||  | | | || |  |||| | ||  |||              
GAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTTCATTGATGTTGTAGAGgta-tgttattaatgc--ttccacagatatttactgaacttgaga---ttgtcatttctgtagattttttatctt-gaaattgagataattattattttccaaatta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86025275|gb|DR321028.1|DR321028
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: gi|86025278|gb|DR321031.1|DR321031
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: gi|86025276|gb|DR321029.1|DR321029
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: gi|86076496|gb|DR372253.1|DR372253
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: gi|164100725|gb|ES047250.1|ES047250
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCCATATATCGAGGAGCAATGAAAGGGAAGATG
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATG
EST: gi|86025279|gb|DR321032.1|DR321032
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: gi|86025282|gb|DR321035.1|DR321035
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: gi|86025281|gb|DR321034.1|DR321034
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: gi|86025274|gb|DR321027.1|DR321027
EST:     AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG                         GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA