1 5' 3' | 2 5' 3' | 3 5' 3' |
GATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGATGGTAACAATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtctttcattttatgatgcttgttaatataatcagaatgtttgaatgatttgggatcattttgttgcag
species | Arabidopsis thaliana |
transcript | AT3G23490.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAG AGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGEST: gi|86077490|gb|DR373247.1|DR373247
genomic: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtcttt ... tttgttgcagAGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGG
EST: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAG AGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAAEST: gi|116453344|gb|EG495936.1|EG495936
genomic: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtcttt ... tttgttgcagAGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAA
EST: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAG AGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAAEST: gi|125044907|gb|EL117176.1|EL117176
genomic: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtcttt ... tttgttgcagAGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAA
EST: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAG AGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAAEST: gi|124999299|gb|EL071568.1|EL071568
genomic: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtcttt ... tttgttgcagAGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAA
EST: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAG AGGACGGAGAATATGGTCTCAAGGEST: gi|124878587|gb|EH958024.1|EH958024
genomic: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtcttt ... tttgttgcagAGGACGGAGAATATGGTCTCAAGG
EST: CGCTTGATGGAAAGTATCTTTCGCATTTCCGAACAG AGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAAEST: gi|116453343|gb|EG495935.1|EG495935
genomic: CGCTTGATGGAAAGTATCTTTCGCA-TTCCGAACAGgttagtcttt ... tttgttgcagAGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAA
EST: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAG AGGACGGAGAATATGGTTTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAA
genomic: ATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtcttt ... tttgttgcagAGGACGGAGAATATGGTCTCAAGGCTAAATCTCAAGGGAGGTACAAGCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGATGGTAACAATCGCGTGGTTGTGACGCTTGATGGAAAGTATCTTTCGCATTCCGAACAGgttagtctttcattttatgatgcttgttaatataatcagaatgtttgaatgatttgggatcattttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA