Sequence
atgc intronic sequence ATGC exonic sequenceTGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGgtttgtttactatctttcttcttgcatcatgtcaaggaatcatattgagaatgttaatgtgttagtgtcttaagggagaggaacaattagggttgtttca...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G23325.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G23325.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G121942_T03 (Zea mays), 5'ss of exon 4
TGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGgtttgtttactatctttcttcttgcatcatgtcaaggaatcatattgagaatgttaatgtgttagtgtcttaagggagaggaac--aattagggttgt-ttca------------------------------------------
|| |||||||| || || ||||| ||||| || ||||| | || ||||| || |||||||||||||| || || ||||||||||||| ||||||||||| | | | ||||||| | || | | || || ||| || | | | | || | | | ||| |||||| || | || |
AGACAGTTATGCCTCTTATATTGGGCACTATCCAATGCTAGCATATTTTGCCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctccactcttcttctaa-gttatagctcaaatgtttagaga-aattctagcgcataaatatcatggttaaaaaaaacctaattagacttatgtttactcacgattgaacctgaaatggacccctagtgtcttgtttag
upper sequence: AT3G23325.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G121942_T01 (Zea mays), 5'ss of exon 4
TGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGgtttgtttactatctttcttcttgcatcatgtcaaggaatcatattgagaatgttaatgtgttagtgtcttaagggagaggaac--aattagggttgtttca
|| |||||||| || || ||||| ||||| || ||||| | || ||||| || |||||||||||||| || || ||||||||||||| ||||||||||| | | | ||||||| | || | | || || ||| || | | | | || | | | ||| |||||| || | |
AGACAGTTATGCCTCTTATATTGGGCACTATCCAATGCTAGCATATTTTGCCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctccactcttcttctaa-gttatagctcaaatgtttagaga-aattctagcgcataaatatcatggttaaaaaaaacctaattagacttatgtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124765617|gb|EH855747.1|EH855747EST: CGAATCTATTGGTCGAGAACGTTACAACTTCATGCAG AAAATGCTCTTACCTTGCGGCCTTCCTCCAGAAAGAGAAGAACGAGTAAGA
genomic: CGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGgtttgtttac ... ttttttgcagAAAATGCTCTTACCTTGCGGCCTTCCTCCAGAAAGAGAAGA-CGAGTAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGgtttgtttactatctttcttcttgcatcatgtcaaggaatcatattgagaatgttaatgtgttagtgtcttaagggagaggaacaattagggttgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaacaa