Sequence
atgc intronic sequence ATGC exonic sequenceCTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGgtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G22850.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G22850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os03g58170.1 (Oryza sativa), 5'ss of exon 4
CTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGgtatgtagcaagccgtttttcgggtt--ttgaagacatctcactgttcttt--gatctagtgcaaa----tatgaattaggatgtggttgtgtgtatgcataatgcag
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TTTTATTGGGGAGTTGATCCTGACAGCCGTCTTGTGGTTTCTGATGATGACGAAATTGTGAATAAGGCTTGTGGAAAATCCTCTGCACCATTCCCTAAAGgtaatgaatgataagcttaatcaaccaatcaacaatatcacatcaattctcaaggcctggaactatgcctcttttatcaacacctgac-gtgtaatggcttcat-cag
upper sequence: AT3G22850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g04160.t01 (Vitis vinifera), 5'ss of exon 3
CTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGgtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcag----
||| ||||||| ||| ||||||| ||||||||| |||||||||||| |||||||| |||||||| ||||| | ||| ||||| ||||| ||||||||||| | | | ||| | | ||||| ||| | || | | | ||| || ||| | |||| | ||
TTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtat-tgtta---tatgttttgcatattgaatccatagtttggggaaaccatttcatcattgtttgagtttttccatgggaacctactcgcatgtttcaaatgg
upper sequence: AT3G22850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0036g00050.t01 (Vitis vinifera), 5'ss of exon 4
CTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGgtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcag----
||| ||||||| ||| ||||||| ||||||||| |||||||||||| |||||||| |||||||| || || ||||| ||||| ||||| ||||||||||| | | | ||| | | ||||| ||| | || | | | ||| || ||| || |||| | ||
TTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAGgtat-tgtta---tatgttttgcatattgaatccatagtttggggaaaccatttcatcattgtttgagtttttccttgggaacctgctcgcatgtttcaaatggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124992457|gb|EL064726.1|EL064726EST: TCCTTTGCGCCATTCCCTAAAG GATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAA
genomic: TCCTTTGCGCCATTCCCTAAAGgtatgtagca ... cataatgcagGATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGgtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG