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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTGTATCAATCTACTCTGTTCTTGCACCTCCAAATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCTCTTCTTCAGgttcacatggagatttcgtcttcttatttaggatgttttatttcatgttcatatattttgctgaatccatcagatttctaatgattttctgtcttgttgttttactctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G20800.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 3
GAGATTGTATCAATCTACTCTGTTCTTGCACCTCCAAATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCTCTTCTTCAGgttcacatggagatttcgtcttcttatttaggatgttttatttcatgttcatatattttgctgaatccatcagatttctaatgattttctgtcttgttgttttactctgcag
|| || || ||||| ||| |||||||| |||| |||||||| |||||||| || || ||||| || |||||  | || |||||||||||||| || ||| |  | | || |||    ||    |||   ||||  | |   | |   |   |   | ||| | ||  ||    || ||||   |        |         
GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgt-cagatg-acttattgtgttcagtattttactgtgacatttattttatttgttagtgaattgcttcattatatgactgcc-atattctagatcaccaaact---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124869758|gb|EH954195.1|EH954195
EST:     CCGTGTTTGCAACTCGCTCGCTCTTCTTCAG                         TGCGTAGCATCTCATTCTGACACGAGAATGTTATTTCTCAAGG
genomic: CCGTGTTTGCAACTCGCTCGCTCTTCTTCAGgttcacatgg ... tactctgcagTGCGTAGCATCTCATTCTGACACGAGAATGTTATTTCTCAAGG