1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATCTGGGCTATTGCAGATTCAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAGgtttagatccagtttatatctcacatttatatgtccatgtctcgctgtgaatctaatgtgttgttattttccaacattatag
species | Arabidopsis thaliana |
transcript | AT3G20290.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCAAAGAGTTTATTGTTGCCATGCAG CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTEST: gi|125059561|gb|EL128238.1|EL128238
genomic: TTCAAAGAGTTTATTGTTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
EST: GAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTTGCCATGCAG CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTEST: gi|116430168|gb|EG472760.1|EG472760
genomic: GAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTG-TTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
EST: CAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAG CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTEST: gi|125263744|gb|EL277829.1|EL277829
genomic: CAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
EST: GTTTCAAAGAGTTTATTGTTGCCATGCAG CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
genomic: GTTTCAAAGAGTTTATTGTTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGGGCTATTGCAGATTCAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAGgtttagatccagtttatatctcacatttatatgtccatgtctcgctgtgaatctaatgtgttgttattttccaacattatag
- - - - - - - - - - AAGAGA