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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAGgttattctctaaacgcttcattcaaacattcttgttctagttgtcattgtgataattggattcaaaattttttagtggatatgtattcagctttgagttc...

Basic information

species Arabidopsis thaliana
transcript AT3G18680.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G15610.1 (Glycine max), 5'ss of exon 3
GTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAGgttatt-ctctaaacgcttc-attcaaacattcttgttctagttgtcattgtgataattg-gattcaaaattttttagtggatatgtattcagct--ttgagttc
 | || ||||| ||||||||||| || |||||||||||||| |||||||||||||| | | |  |  |  |||  |||| || | | || || |   | |  || |  |  ||  | | ||  || | ||  | || ||  |||   ||  ||||    
ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgactacaatggattcttttattctaatactttttttgtttcttttgttctagtttttctgctgcatcatctgttgtttgagat-catttgactaattga----

upper sequence: AT3G18680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G32340.1 (Glycine max), 5'ss of exon 3
GTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAGgttattctctaaacgcttcattcaaacattcttgttctagttgtcattgtgataattggatt-caaaattttttagtggatatgtattcagctttgagttc--
 | || ||||| ||||||||||| || |||||||||||||| |||||||||||||| |    | |     ||  || | ||      ||| | |||    |||| ||| ||    | |   ||  | |  ||  | ||   ||| | ||    |   
ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgacaa-caatggattttttttatactaatacgtttttgtttcttttgttatagtttttctgctgcatcatctgttg--tttgagatcatcatttgactaat

upper sequence: AT3G18680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0044g00890.t01 (Vitis vinifera), 5'ss of exon 4
GTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAGgttattctctaaacgcttcattcaaacattcttgttctagttgtcattgtgataattggattcaaaattttttagtggatatgtattca-gctttgagttc---
 |||| ||||| |||||||||||||||||| | |||||||| |||||||| ||||| | |||  ||   ||   |   || ||      ||   ||    | ||   |       ||| |||||||  |  | |    |  || |   || | |    
ATTACGATGGCAATTGCAAGGGAAGTTGCATCTGTGACTCGGCTTGGCATAGAGgtaaatcttcaacatctatttctgaatatatccaatcccttttctgtggttgcatca----tcacaatttttgggcagtttgtcaagcatgtcatgtggttata