Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaaatcataagtttctttttttctatattctctgatgcattaagtgttgtgatcaaatggttttcgcttctttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G18040.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaaatcataagtttctttttttctatattctctgatgcattaagtgttgtgatcaaatggttttcgcttctttgcag
 || ||||||||||||||  ||||||||||| ||||| ||||||| || || ||||| |||||||| ||||| ||| | || || || ||||||||||| ||  |  | | | | |  |    |   | ||| ||   | ||   | |    ||   |   | | ||  |||  |    ||||| ||  ||
CAAGAATATTCTAGCCAATGCTGATTGCAAGCTGAAGGTTTGCGATTTCGGCCTTGCCCGAGTGTCATTTAACGATACCCCATCAGCCATATTCTGGACGgttaggcatttattaatgttgagaagatatttcttaaca-atgaacagccatatcttggcatctaat-gaattttccatgcttcgttctag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g45620.1 (Oryza sativa), 5'ss of exon 2
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaaatcata----agtttctttttttctatattctctgatgcattaagtgtt-gtgatcaaatggttttcgcttc--tttgcag--------------
 || || ||||| |||||  ||||||||||| | |||||||| ||||| || |||||||||||||||||  | ||  | || || || ||||||||||| |||    |   |    | |  ||    |||    | | ||    ||| | | |  | |||||      | ||    ||  |||   |||  ||||  |              
CAAGAACATTCTTGCCAATGCTGATTGCAAGGTCAAGATTTGTGACTTCGGCCTTGCTCGAGTGTCCTTCGACGACACTCCGTCCGCGATATTCTGGACGgtaaaagaacaatcctagtactagtacagtcagatatgttgagaattgtgttagcccttaagcacccatcatagtttgaattttaattcgttttgtggtccttttgtcgtag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G375975_T01 (Zea mays), 5'ss of exon 2
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaaatcataagtttctttttttctatattctctgatgcattaagtgttgtgatcaaatggttttcgcttctttgcag
 || || ||||| ||||||   || |||||| | |||||||| ||||| || |||||||| ||||| || || ||| ||||||| || ||||||||||| |||  |    ||   | ||  | | | |         ||      |  |    |||||| || || ||      ||   |  |  || |||
CAAGAACATTCTCGCCAACGGCGACTGCAAGCTCAAGATTTGTGACTTCGGCCTTGCTCGGGTGTCTTTCAACGATACACCTTCAGCCATATTCTGGACGgtaaccagagcacatatattgtgactgtgagacacgataagcagccacacagtttaagtttt-tgttc------ttgctgtgtaattacag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaaatcataagtttctttttttctatattctctgatgcattaagtgttg-tgatcaaatggttttcgcttctttgcag---
 || ||||||||||||||  |||| |||||| |||||||||| || ||||| ||||| || || || || |||||  | || || || ||||||||||| ||| || | |   ||| ||  |         ||     || ||   |||    | |||  ||| |  ||  ||| | |    |  ||||| |   
CAAGAATATTCTAGCCAATGCTGACTGCAAGCTGAAGATTTGTGATTTTGGCCTTGCCCGCGTTTCATTCAATGACACTCCATCAGCCATATTCTGGACGgta-gccattt--tgatattgttgagcaaaatt-----atgtttgttgaacagtcaagacttgattttcttatgatgtagaatcttttgctgtag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgta--tgctactcaatgaaatcataa------gtttctttttttctatattctctgatgcattaagtgttgtg------at--caaatggttttc---gcttctttgcag------------------------------------
 ||||||||||| || ||| ||||||||||  | || || || || ||||||||||||||||| || ||||||||||| || || |||||||||||||||||   |||  |    ||  | |||        ||| | ||| |    |||  |||||    | |  | ||| |      ||  ||||| |   ||   | ||||    |                                     
AAAAAATATTCTTGCTAACGCTGATTGCAAACTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCATCAGCTATATTCTGGACTgtgagtgcaccattgtgtgaccatgttgaactgttacatttatcaattatgttctgacttttaagcttttgagtgggaaattgcaaatagccatctaggtttctccctaaacctgttgctgacttattttatctactatgaataag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgta--tgctactcaatgaaatcata------agtttcttttttt--ctatattct----ctgatgcatt-aagtgttgtgat-caaatggttttc---gcttctttgcag------------------------------------
 ||||| ||||| || ||| ||||||||||  | || || || || ||||||||||||||||| || ||||||||||| || || |||||||||||||||||   |||  |    ||  | |||        ||| | ||| |    ||| ||||     | |||| ||  ||||      | ||||| |   ||   | ||||    |                                     
AAAAAACATTCTTGCTAACGCTGATTGCAAACTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCATCAGCTATATTCTGGACTgtgagtgcaccattgtgtgaccatgttgaacggttacatttatcaattatgttctgacttttatgcttttgagtgggaaattgcaaattgccatctaggtttctccctaaacctgttgctgacttattttatctactttgaataag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G11470.1 (Glycine max), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatg--------ctactcaatgaaatcataagtttcttttt--ttcta----tattctctgatgcattaagt-----gttgtgatcaaatggttttcgcttct-ttgcag----------------------------------------------------
 |||||||||||||| ||  ||||||||||| | ||  | || || ||||| ||||||||||| || |||||||| |  || || |||||||||||||||||| |        | | |  ||| | | || ||||   ||||  ||||     | |  | | |    || ||        ||  |||||||  |  |   |||| || |||                                                    
AAAAAATATTCTAGCTAATGCTGATTGCAAGCTAAAATTATGTGATTTTGGACTTGCTCGAGTTTCATTTAATGAGGACCCATCAGCTATATTCTGGACTgtaagtattctagcaaattgatgcacttattagttctgttttgcttctgcttttgtcttttaagatttttagctggaaagtgcaatcaaat--tcattatttctgttccagaatcatccttctaaatattttgctgactgattttatctactctcttactaag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaaatcataagtttctttttttctatatt-ctctgatgcattaagtgttgtgatcaaatggttttcgcttctttgcag
 ||||| || || || ||  | || |||||  |||||||||| || |||||||||||||| ||||| ||||||||| | || ||  |||| || ||||||||||    ||   |      || |  || |    ||   | ||  | | |     | |||  ||| |        || ||     |||| ||
AAAAAACATCCTTGCTAATGCAGACTGCAAACTGAAGATTTGTGATTTTGGGCTTGCTCGCGTGTCATTTAATGATACCCCATCAACTATCTTTTGGACTgtatatatctattttttgcaatgaaattatgagctttagtgttattttaacaggatgagt-ctgtaac-------ttatctacattttgaag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaaatcataagtttctttttttctatattctctgatgcattaagtgttgtgatcaaatggttttcgcttctttgcag----------------------------------------------------------
 ||||||||||| || ||  | || ||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| |||||||| |||||          |||   ||    |    ||| ||  |||     || |           | |   | |   |||   ||  |   |                                                           
AAAAAATATTCTTGCTAATGCCGACTGCAAGTTGAAGATTTGTGATTTTGGGCTTGCTCGGGTGTCATTCAATGATGCACCATCAGCTATTTTCTGGACAgtatgtagtcttgccaaa--gtactcctgacatttgctgcatttctgcatacggccgagaaaattacttagtctcttttattttatgatactttaaaatttttgaaagctagaaactttaactaatcatatttatttactttttcaaag

upper sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S80_71V6.2 (Physcomitrella patens), 5'ss of exon 3
TAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTTGCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTgtatgctactcaatgaa-atcataagtttctttttttctatattctctgatgcattaagtgttgtgatcaaatggttttcgctt--ctttgcag---------------------------------------------------------
 || ||  |  | || ||| |||| || ||  |||| ||||| |||||||| |||||||||||| |||||| |||||| ||  | ||||| |||||||| ||||| |  ||    |       || ||     | || ||  ||||| ||  |  |   | ||  |  |   | |     |     |||| | |                                                         
AAAGAACGTGTTGGCAAACGCTGACTGTAAACTGAAAATTTGTGACTTTGGACTTGCTCGAGTGGCCTTTAGTGATGCTCCAACAGCTATCTTCTGGACGgtatggtcttccgccattgctggaaattaaaaatattataggttctcggaaaccattgttattaagtccttctaggcacggtcaaactttactgccaggaaaagttctgaagctgtgtaacctgcatgaattctgttgttgggtacttcag