1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAAACCTATCATTGGATTATTAGATGGGAAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCAgtaagaatcttttccccttttgttctctgaatctgattcagtgttttgcagaattagattcttgatcatataacaacaaaagttctcagcttttaatcaa...
species | Arabidopsis thaliana |
transcript | AT3G16500.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCA AATGTTTGTTTCATCTGTGAAGAGACTGEST: gi|124796509|gb|EH886188.1|EH886188
genomic: TATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCAgtaagaatct ... ttaaacacagAATGTTTGTTTCATCTGTGAAGAGACTG
EST: GAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCA AATGTTTGTTTCATCTGTGAAGAGEST: gi|164131470|gb|ES031548.1|ES031548
genomic: GAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCAgtaagaatct ... ttaaacacagAATGTTTGTTTCATCTGTGAAGAG
EST: TATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCA AATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGC
genomic: TATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCAgtaagaatct ... ttaaacacagAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAACCTATCATTGGATTATTAGATGGGAAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTCCATGGCAgtaagaatcttttccccttttgttctctgaatctgattcagtgttttgcagaattagattcttgatcatataacaacaaaagttctcagcttttaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa