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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTGCAACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAGgtgtgaccaaacttcttcttttggacttactactacttgtgtctgtgatgagacgagtttaatatgtgatgattcgcttaactcttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G16260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g13150.1 (Oryza sativa), 5'ss of exon 5
GGGTTGCAACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAGgtgtgaccaaacttcttcttttggacttac--tactacttgtgtctgtgatgagacgagtttaatatgtgatgattcgcttaactctt--ttcag----------
||  | |||||||| ||||||||||| || || |||||||||||||| |||      |    |   || | | |   || | ||| | ||  || |     | ||||   |       | | |||||| | ||  |||            
GGTCTTCAACGTTTCTGTACTGAACACAAGATAAAGTTATCAAAGgtatgaggtccttctcgccaatgcattgatcatatttcttttatccttgtttgattgtgtttgtaaaccagcaacttgcttaaatgttgattctccacctcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877303|gb|AU238134.1|AU238134
EST:     GGGTTGCAACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAG                         GTAGATCATATATTTTTGTCTCGNGTGTGCTCAGAGACAGCAGGCGGGCTT
genomic: GGGTTGCAACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAGgtgtgaccaa ... ctcttttcagGTAGATCATATATTTTTGTCTCGTGTGTGCTCAGAGACAGCAGGCGGGCTT