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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttctctagctattttcaagtgttgaggctctttaactcaattaacttcttacaaaacttttttggattagggtgaaaag

Basic information

species Arabidopsis thaliana
transcript AT3G15840.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15840.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0002g06980.t01 (Vitis vinifera), 5'ss of exon 3
ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttctctagctattttcaagtgttgaggctctttaactcaattaacttcttacaaaacttttttg--gattagggtgaaaag---------
    ||||||||||||||||| ||||| ||  | || |  |||||||| |||||||| ||||||||||| ||||| || |  || ||| |||| ||| |   || |  | | | |   |||  |  |    |    |  ||  |  | |   ||   |||  |  ||||||          
GGTTAAGCTTCCTTCATGGGCGATGTTTGAACTTGGGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgtcttg--gttgttgattttaggaactcggttgcattttcccttggttttattattccgttaatgatgtgcttgaaaaatttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830759|gb|CK120443.1|CK120443
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|47830759|gb|CK120443.1|CK120443
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|116420760|gb|EG463352.1|EG463352
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|116420760|gb|EG463352.1|EG463352
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|47828708|gb|CK118392.1|CK118392
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|47828708|gb|CK118392.1|CK118392
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|116428971|gb|EG471563.1|EG471563
EST:     TGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: TGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|116428971|gb|EG471563.1|EG471563
EST:     TGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: TGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|47831953|gb|CK121637.1|CK121637
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         TTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTTAACGAAGAC
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... gggtgaaaagTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTTAACGAAGAC
EST: gi|116441102|gb|EG483694.1|EG483694
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|116441102|gb|EG483694.1|EG483694
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|116479684|gb|EG522276.1|EG522276
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg
EST: gi|116479684|gb|EG522276.1|EG522276
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAGGTGAAAA                  
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTC--------Agtaagtttct ... ggg