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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTGGAATTGGCTGGTCGGTCAAAGCTAAGTAGTTTATGTTGGAACAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGgttagttttacattcagctctagcgttattaaaaacttccagtttcataaaaccaatttgggatacatatgtttttgttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G15354.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G25240.1 (Glycine max), 5'ss of exon 5
GGTGGTGGAATTGGCTGGTCGGTCAAAGCTAAGTAGTTTATGTTGGAACAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGgttagttt---tacattcagctctagcgttattaaaaac-ttccagtttcataaaaccaatttgggatacatatgtttttgttttcag------------
 || || ||  ||| | | |||||||   | ||||||  ||||||||| |  ||||| || || |||||||| |||||||||||||| |||||||| |||||  |  |    | |   |  | |    | |||     | |||  ||  |    ||         || |||||        || | |             
AGTAGTTGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGgtaggcctacgcataagaaattatttgatgatttgggtcattctggtccctatcaatttccacatgacacatagtcaagctttattaattctttctcata

upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 5
GGTGGTGGAATTGGCTGGTCGGTCAAAGCTAAGTAGTTTATGTTGGAACAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGgttagtt-ttacattc--agctctagcgttattaaaaac--ttccagtttcataaaaccaatttgggatacatatgtttttgttttcag-----------
 || |||||  ||| | | |||||||   | ||||||  ||||||||| |  ||||| ||||| |||||||| || ||||||||||| |||||||| |||||  |   | ||||    |  | |  | | |||    ||  ||    |  |    ||         || |||||        || | |            
AGTAGTGGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAGAGTCAAATTGCTTCGAGTAACTTTGAAGGTGTTGTACAGgtaggccatcacatgagaaattattacatgattttggaccattgtgatccctatcaatttccacatgacacatagtcgagctttattaattcttttttgt

upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv19s0014g02660.t01 (Vitis vinifera), 5'ss of exon 4
GGTGGTGGAATTGGCTGGTCGGTCAAAGCTAAGTAGTTTATGTTGGAACAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGgttagttttacattcagctctagcgttattaaaaacttccagtttcataaaaccaatttgggatacatatgtttttgttttcag
  | || ||| ||||| || ||||||||||||| ||| |||||||||| || || || || ||||| ||||| || ||||||||||| ||||| || ||||| || |  |   ||| |  |  | || |||     |  | || |   |      |  ||      |  |||     | | |||
TTTAGTTGAAATGGCTTGTAGGTCAAAGCTAAGCAGTATATGTTGGAATAGTTATATCAAAAGCCAGATTGCTTCCAGTAACTTTGAAGGTGTAGTACAGgt-aggtcaagcctcatccatctcatttttaccttttagctgtctatcatgttatagctgctgcttaattgtaaa-atgtccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125230869|gb|EL244954.1|EL244954
EST:     GCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAG                         ATATGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGAT
genomic: GCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGgttagtttta ... ttgttttcagATATGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGAT