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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGAAACTCCTGCAAAACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCGATGTGAAATCGACGGTGTTCAGgtttgttccctattatacaacaattttttgtttcttataataatatggtgaccttgttctgatatttttttcttgtttatataccag

Basic information

species Arabidopsis thaliana
transcript AT3G14810.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G303244_T01 (Zea mays), 5'ss of exon 3
ATTTGGAAACTCCTGCAAAACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCGATGTGAAATCGACGGTGTTCAGgt--ttgttccctattatacaacaattttttgtttcttataataatatggtgaccttgttctgatatttttttc-ttgtttatataccag
 ||||| ||  | |  || ||  |||| || || ||  | ||| | || || ||||| || ||||||||||||||||| |||||||| || |||||||||||  |||    || || | |    | | |||  | |    || | |     |  || | |    ||  ||||||  ||  |  ||  |||
GTTTGGGAATACGTTGAAGACGCTCTTTGAGGCAATTGTCTTCTTGTTCGTGATGCATCCCTTTGATGTCGGTGACCGCTGTGAAATTGAAGGTGTTCAGgtagttgggatctctt-tgctcttactctttagtccaccaaacatttcatcgcgctcgctggcttaggtttttcactgccttgatttcag

upper sequence: AT3G14810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G43050.1 (Glycine max), 5'ss of exon 3
ATTTGGAAACTCCTGCAAAACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCGATGTGAAATCGACGGTGTTCAGgtt-tgttc-cctattatacaacaattttttgtttcttataataatatggtgaccttgttctgatatttttttcttgtttatataccag
|||||||||| ||||||| ||||| || ||||| || |||||| | ||||| ||||||||||||||||| || ||  |||||||||| || || ||||||||  |||||  ||||    | || | ||||      || |  |   |||  ||| | |  || |  |||    | |||||   |||   
ATTTGGAAACACCTGCAAGACCATATTTGAAGCAATTATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAGgtaatgttcatctatccatccacgagttttaacagattctgttttcatgtagacatggc-ctaacttttcccccatgtttgc-tacag-

upper sequence: AT3G14810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G23910.1 (Glycine max), 5'ss of exon 5
ATTTGGAAACTCCTGCAAAACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCGATGTGAAATCGACGGTGTTCAGgtt-tgttccctattatacaacaattttttgtttcttataataatatgg---tgaccttgttctgatatttttttcttgtttatataccag------
|||||||||| ||||||| ||||| || ||||| || |||||| | ||||| ||||||||||||||||| || ||  |||||||||| || || ||||||||  |||||     |  || |   ||       |  | |  | || | |   || |||  |||       |    |  ||||    ||||       
ATTTGGAAACACCTGCAAGACCATATTTGAAGCAATTATTTTCTTGTTTGTCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAGgtaatgttcatccatcgacgagttttaagcagattctgttttcatgtagacatggcctaattcc--cccctccaccccgtttgctaaccaatttcag