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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGGATATGGCCTATTTGTATGGAACAGATTGCTTCTCAGAAGATTCTTCGTCCGATCATACCTTGGTTCTTGGACAAGTATAGACCTTGGACTGCGgtaactctttcaaattttgagtctttccagtttcgttttgtgtctagttagccctttgtagtagtactagctaggccactaactgtagctcagtttacagtcgaaaaaccgacttagtattgatggaatgataatttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G14590.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv19s0138g00140.t01 (Vitis vinifera), 5'ss of exon 3
GGAGAGGATATGGCCTATTTGTATGGAACAGATTGCTTCTCAGAAGATTCTTCGTCCGATCATACCTTGGTTCTTGGACAAGTATAGACCTTGGACTGCGgtaactctttcaaattttgagtctttccagtttcgttttgtgtctagttagccctttgtagtagtactagctaggcc--actaactgtagctcagtttacagtcgaaaaaccgacttagtattgatggaatgataatttgtgcag
 || | ||| ||||| || |||||||||||||||| ||| ||||| ||||| | ||| |||||||||||||||||||| ||||| | ||| ||||| || |||    |        |||  |  ||   || |   ||    ||   |||    |  || |||  |||   | || |    |   ||    |   ||| || |                                          
TGAAAAGATTTGGCCCATATGTATGGAACAGATTGTTTCACAGAAAATTCTCCTTCCTATCATACCTTGGTTCTTGGAGAAGTACAAACCCTGGACAGCTgtatgaatcgactcacttggataatttatgtatt-cttcacatc---ttaattttaagt-gtaacactgattggggcttgtttcttgatttttttttttcacttt----------------------------------------