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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTAACTTATTGAAGCCTGATATGAGCAAAAGTGGAGGAATGGATCCTGGTGGCTATGTCAAAGTAAAGTGCCTAGCTTCTGGATTCCGACATGATAGgtaatagaagtaaaaacatttaaccttaaaatactgctgtcgagcctgtagtgcttcaattcacgcactgtgtattttcatcatgtcatctggattcttgtgaagtttcattctttattaatccatctcgtgtgttattttacag

Basic information

species Arabidopsis thaliana
transcript AT3G14270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S65_215V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGCTAACTTATTGAAGCCTGATATGAGCAAAAGTGGAGGAATGGATCCTGGTGGCTATGTCAAAGTAAAGTGCCTAGCTTCTGGATTCCGACATGATAGgtaatagaagtaaaaacatttaaccttaaaatactgctgtcgagcctgtagtgcttcaattcacgcactgtgtattttcatcatgtcatctggattcttgtgaagtttcattctttattaatccatctcgtgtgttattttacag
|||| ||  || | || || ||||  || ||| | || || |||||||| ||||||||||| ||||| |||||  |||||||||||   ||  | |||||||||| | | |        || | |  |||||  |  |||  |      | |  | |   |   |   |  | |  |  ||||  | || | | |  |  | || ||                                      
CTGCCAATCTAGTTAAACCGGATACAAGTAAAGGAGGTGGTATGGATCCAGGTGGCTATGTGAAAGTTAAGTGTATAGCTTCTGGACGGCGCGAAGATAGgtaatggtactg----tgcttgagc--aaaattttcatgtgtaattatgaataatcctgatt-tgagataagcacgtg-atcacttgatattgttaataataaatttg-------------------------------------