1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TTGAAACATGTTTCCGCTTTACTGCGGCGTGACCATGCTGTGGCAGTCCGCTGTTTCTCCAACAGTACCCACCCCTCTCTCGTTGGAAGAGAAGgtaatccagtcagctttcttagtgtcctcttcattgctatccttaagttcattttatgtagaaatgtgtggtggtttcttttatttgatacggtaacaag...
species | Arabidopsis thaliana |
transcript | AT3G13930.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCGTTGGAAGAGAAG ATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATEST: gi|152038127|gb|BP808947.2|BP808947
genomic: CTCGTTGGAAGAGAAGgtaatccagt ... tggtcttcagATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAAT
EST: AGTCCGCTGTTTCTCCAACAGTACCCACCCCTCTCTCGTTGGAAGAGAAG ATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATEST: gi|152037856|gb|BP800329.2|BP800329
genomic: AGTCCGCTGTTTCTCCAACAGTACCCACCCCTCTCTCGTTGGAAGAGAAGgtaatccagt ... tggtcttcagATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAAT
EST: AGTCCGCTGTTTCTCCAACAGTACCCACCCCTCTCTCGTTGGAAGAGAAG ATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAAT
genomic: AGTCCGCTGTTTCTCCAACAGTACCCACCCCTCTCTCGTTGGAAGAGAAGgtaatccagt ... tggtcttcagATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAACATGTTTCCGCTTTACTGCGGCGTGACCATGCTGTGGCAGTCCGCTGTTTCTCCAACAGTACCCACCCCTCTCTCGTTGGAAGAGAAGgtaatccagtcagctttcttagtgtcctcttcattgctatccttaagttcattttatgtagaaatgtgtggtggtttcttttatttgatacggtaacaag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaacaa