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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCGCACTATAAAAAAGTTTCCCTTGTTGACTCCAAGGGAGTATGTATTAGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGgtaatgatgcacttatcttaagggcattatttttaatgctattatttctaaattacattattcatttgcacctatgcattcctctttaaatttgctaagt...

Basic information

species Arabidopsis thaliana
transcript AT3G13062.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125325354|gb|EL339434.1|EL339434
EST:     TAGCGTGGAAATTGTGG-AGGG-AAGGATAAGTTTTACTGTTTCATCAAG                         GAATGTGATCACAATATGGTG
genomic: TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGgtaatgatgc ... ttattatcagGAATGTGATCACAATATGGTG
EST: gi|116484403|gb|EG526995.1|EG526995
EST:     TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAG                         GAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGT
genomic: TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGgtaatgatgc ... ttattatcagGAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGT
EST: gi|125316100|gb|EL330185.1|EL330185
EST:     AATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAG                         GAATGTGATNACAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGT
genomic: AATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGgtaatgatgc ... ttattatcagGAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGT
EST: gi|125236155|gb|EL250240.1|EL250240
EST:     CGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAG                         GAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGT
genomic: CGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGgtaatgatgc ... ttattatcagGAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGT
EST: gi|124937897|gb|EL014580.1|EL014580
EST:     TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAG                         GAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTACGT
genomic: TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGgtaatgatgc ... ttattatcagGAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTACGT