1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGCTAGGGAGGGCAACAATCGAAGAGTCCCGCAGTCTTATTCACTGGCTAGACACTGAGGAAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGGgtaagttacatttatcttcttctatgaacaacttgtgagctaatgcattgagttaaattggatgaataagtgttagatctgcgttttcaccaaggttatc...
species | Arabidopsis thaliana |
transcript | AT3G12150.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTGTGGGCTAAGTATGG GAGGAGTACATGCTTCGATGGTTGGATCGCTTCATCCAACACCAGTTGCAAEST: gi|116474238|gb|EG516830.1|EG516830
genomic: TTTGTGGGCTAAGTATGGgtaagttaca ... aatatattagGAGGAGTACATGCTTCGATGGTTGGATCGCTTCATCCAACACCAGTTGCAA
EST: AGACACTGAGGAAG-CTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGG GAGGAGTACATGCTTCGATGGTTGGATCGCTTCATCCAACACCAGTTGCAAEST: gi|116474249|gb|EG516841.1|EG516841
genomic: AGACACTGAGGAAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGGgtaagttaca ... aatatattagGAGGAGTACATGCTTCGATGGTTGGATCGCTTCATCCAACACCAGTTGCAA
EST: AGACACTGAGGAAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGG GAGGAGTACATGCTTCGATGGTTGGATCGCTTCATCCAACACCAGTTGCAA
genomic: AGACACTGAGGAAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGGgtaagttaca ... aatatattagGAGGAGTACATGCTTCGATGGTTGGATCGCTTCATCCAACACCAGTTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTAGGGAGGGCAACAATCGAAGAGTCCCGCAGTCTTATTCACTGGCTAGACACTGAGGAAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGGgtaagttacatttatcttcttctatgaacaacttgtgagctaatgcattgagttaaattggatgaataagtgttagatctgcgttttcaccaaggttatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaacaa