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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGCCATGATCCGCATGTTTTGTATACACTCAGTGCTGTACAAATCTTGGCCCTCTTCGACAAACTCAACATTCTTGATGTTGAAAAAGTTTCAAATTgtatcctttacgcattcagcttcttgtcactgtgaaaataaataaactcggtaattcgtttgttgtagatacaattatgctttttctaaatgcaaaaactag

Basic information

species Arabidopsis thaliana
transcript AT3G12070.1
intron # 3
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12070.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv15s0024g00080.t01 (Vitis vinifera), 5'ss of exon 4
ACTGGCCATGATCCGCATGTTTTGTATACACTCAGTGCTGTACAAATCTTGGCCCTCTTCGACAAACTCAACATTCTTGATGTTGAAAAAGTTTCAAATTgtatcctttacgcattcagcttcttgtcactgtgaaaataaat---aaactcggtaattcgtt-tgttgtagatacaattatgctttttctaaatgcaaaaactag
  ||| |||||||| ||| | |||||||| |||||||| |||||| | || || || || ||||| || ||  |||||||| |||| || || |||||||||||||||   | ||  |   |  |||   | ||||| |  ||   |||   | |  | ||   |||| | |      |||   |      || |   |  |    
GTTGGACATGATCCACATATATTGTATACTCTCAGTGCAGTACAAGTTTTAGCTCTTTTTGACAAGCTAAATGTTCTTGATATTGATAAGGTCTCAAATTgtatccttgg-gtatatacagtggtgt-gttttgaaattttattctaaatatgatgctacgcaatgttattgtcttttttacattgccaacaattcttacta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024985|gb|DR320738.1|DR320738
EST:     GGCCCTCTTCGACAAACTCAACATTCTTGATGTTGAAAAAGTTTCAAATT                         ATATTGCTGGGTTACAG
genomic: GGCCCTCTTCGACAAACTCAACATTCTTGATGTTGAAAAAGTTTCAAATTgtatccttta ... caaaaactagATATTGCTGGGTTACAG