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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAgtatgcagcactattagatgcagatgtacattggtcactattattatttaatctaacatcactatgaagtagcatgttcctaacatgttaaatgatctta...

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os07g38850.1 (Oryza sativa), 5'ss of exon 3
GGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAgtatgcagcactattagatgcagatgtacattggtcactattattatttaatctaacatcactatgaagtagcatgttcctaac-atgttaaatgatctta---------------------------------
|| |  | ||| | || ||  | |  || ||  | ||  | || ||||| |||||||| || || || |||||||||||||| |||||| ||||||| ||||||| |  |    |  ||  ||||  | ||  |  | |||  | || | ||  |  | || || |||  |  || | | |  | || |    | |   ||                                 
GGTGGTTGGTATTCAAAGCGTTCTATGGGCTCGTGGCGTTAATCTGTGGCAATGGTTACATCGTTGGGATCAATCAGATCTATGACATTAGAATCGATAAgtatgtataatctctctat--agattcatataagaaattatggtgatgttatgaattaccattaagaa-caaaatttccttgcctatttcttttaactgtattctgacatttctaattttatgctgctttacag

upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G26820.1 (Glycine max), 5'ss of exon 3
GGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAgtatgcagcactattagatgcagatgtacattggtcactattattatttaatctaacatcactatgaagtagcatgttcctaacatgttaaat--gatctta
||  |||| |  | || ||  | |  |||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||| | || |||||||||| || |     | ||| | |  |   ||  |   | || |  |  | |    | |  |  |   ||  | |   | |  || |||   |   |  |||
GGTCTCTTTTTTTCAAAGCTTTCTGTGGTCTTTTTGCTCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAgtatgaagaa--gacatatggacaactttcttattacttgttgtcttccacttgttcttttcctttttgtgtcctccccgttgcacgtttctttcaaagtta

upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G15720.1 (Glycine max), 5'ss of exon 3
GGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAgtatgcagcactattagatgcagatgta-cattggtcactattattatttaatctaacatcactatgaagtagcatgttcctaacatgttaaatgatctta--
||  |||| |  | || ||  | || |||||| |||| || ||||||||||||||||||||||| ||||||||||| ||||| |||||| | || |||||||||| ||||    || |   |  |||  ||||  |  || |  |    |  | ||   ||  | | | ||  | |   | |  || |||   || |      
GGTCTCTTTTGTTCAAAGCTTTCTCTGGTCTTTTTGCCCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAgtatgaagcaggcatatagataactgtctcattacttgctgtcttccagttgt-tattttccttttcacgt--ccttcccattgcacgtttcttgctgaagtt

upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0007g07200.t01 (Vitis vinifera), 5'ss of exon 3
GGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAgtatgcagcactattagatgcagatgtacattggtcactattattatttaatctaacatcactatgaagtagcatgttcctaacatgttaaatgatctta--
||    |  |  | |||||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || ||  | || |||||||||||| ||||  |  ||  |||  |   ||    |  ||| |||| |         ||  |       ||| | | ||  | |   |   | |||     
GGTCATTGTTGTTCAAGGCATTTTCTGGTCTTCTTGCTCTTATATGTGGAAATGGTTATATAGTGGGCATCAATCAGATCTATGATATCAGTATTGACAAgtatgcaacacttatgtatatagagatcagtttaataa-attgttatatgcaggggtgtc-ttgcatgaaagcctatgccccagagcatgggttatcaggta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085149|gb|DR380908.1|DR380908
EST:     AATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAA                         AGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATCTATCAGTGCAGTC
genomic: AATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAgtatgcagca ... tgttttgcagAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATCTATCAGTGCAGTC