1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCTCTTGGTAGTGCCATTGACGCTCACTTTGGCTCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtctagtttcacctttttatttcatctgctcacattgtcgactctggtgctttacgtataataaccatggtccttgattcgcttgtttctgttgattaattcag
species | Arabidopsis thaliana |
transcript | AT3G10920.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCTCAGGATGGGTG TGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCEST: gi|164143691|gb|ES127584.1|ES127584
genomic: GGCTCAGGATGGGTGgtctgtagtc ... attaattcagTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCC
EST: AGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG TGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCEST: gi|125166269|gb|EL192146.1|EL192146
genomic: AGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtc ... attaattcagTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCC
EST: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG TGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTEST: gi|301501762|gb|HO207302.1|HO207302
genomic: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtc ... attaattcagTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTT
EST: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG TGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCEST: gi|164138873|gb|ES006049.1|ES006049
genomic: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtc ... attaattcagTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCC
EST: AAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG TGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACEST: gi|116426619|gb|EG469211.1|EG469211
genomic: AAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtc ... attaattcagTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAAC
EST: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG TGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCEST: gi|47828007|gb|CK117691.1|CK117691
genomic: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtc ... attaattcagTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCC
EST: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG TGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCC
genomic: TGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtc ... attaattcagTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCTTGGTAGTGCCATTGACGCTCACTTTGGCTCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGgtctgtagtctagtttcacctttttatttcatctgctcacattgtcgactctggtgctttacgtataataaccatggtccttgattcgcttgtttctgttgattaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG