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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCTGGATAAGGTGAAGGGTTGCACTGATGCGGTTGATAATGGTGACAAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgtttttttttttttttttttttccaatgaatttagatgcatctaatctacttgatgtttaactcagtcattttctcttgtcatcgctgattcctctgatatatctacttgttacag

Basic information

species Arabidopsis thaliana
transcript AT3G10850.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876010|gb|AU236841.1|AU236841
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTTATTATGTGAACGGAAAAGAACGAGAAA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTT-ATTATGTGAACGGAAAAGAAGGAGAAA
EST: gi|86023772|gb|DR319525.1|DR319525
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|125302397|gb|EL316482.1|EL316482
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCTACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTC-ACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAA
EST: gi|125290756|gb|EL304841.1|EL304841
EST:     ATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGACGGAGAAAA
genomic: ATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|86023773|gb|DR319526.1|DR319526
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|124822321|gb|EH907187.1|EH907187
EST:     TTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
genomic: TTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|125014382|gb|EL086651.1|EL086651
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGG
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGG
EST: gi|125226986|gb|EL241071.1|EL241071
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|124952367|gb|EL027644.1|EL027644
EST:     GCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
genomic: GCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|125308726|gb|EL322811.1|EL322811
EST:     TGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
genomic: TGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|124740997|gb|EH832159.1|EH832159
EST:     AGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAA
genomic: AGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAA
EST: gi|125136561|gb|EL176591.1|EL176591
EST:     TCAGGATATTAACATATTGGCTCTCCACACTCCCTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
genomic: TCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|86023775|gb|DR319528.1|DR319528
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|164031369|gb|ES193572.1|ES193572
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCGCACCAAGGGTCACA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACA
EST: gi|163985592|gb|EL967496.1|EL967496
EST:     ATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTG
genomic: ATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTG
EST: gi|124964803|gb|EL039040.1|EL039040
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGT
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGT
EST: gi|86023774|gb|DR319527.1|DR319527
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: gi|125086593|gb|EL146019.1|EL146019
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTA
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTA
EST: gi|124799466|gb|EH889145.1|EH889145
EST:     AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG                         TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGG
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTCTGGATAAGGTGAAGGGTTGCACTGATGCGGTTGATAATGGTGACAAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgtttttttttttttttttttttccaatgaatttagatgcatctaatctacttgatgtttaactcagtcattttctcttgtcatcgctgattcctctgatatatctacttgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA