Sequence
atgc intronic sequence ATGC exonic sequenceGTATGAAGGACAACGCGACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTgtatgtatttcttgttctcttctcttctaagaggtgttcaatgtttgaatggttgtgtatctattaaatctgctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G10640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G10640.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G33960.1 (Glycine max), 5'ss of exon 3
GTATGAAGGACAACGCGACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTgtatgtatttcttgttctcttctcttctaagaggtgttca---atgtttgaatg-gttgtgtatctattaaatctgctgcag-------------------
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GTATGAAGGCCAGCGTGACATGCTGTACAATCAGACATTCAATCTCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACTgtatgtatcaaagcacttatagttttctctgtgacccttacctatattgaactgtgttttatctcgcatccatttg-tgtatcatatttctttgttctgtg
upper sequence: AT3G10640.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G33630.1 (Glycine max), 5'ss of exon 3
GTATGAAGGACAACGCGACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTgtatgtat--------ttcttgttctctt-----ctcttctaa-gaggtgttcaatgtttgaatggtt-gtgtatctattaaatctgctgcag-------
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GTATGAAGGCCAGCGTGACATGCTGTACAATCAGACGTTCAATCTCGATCAAGTTCAATTTGCTGCTGAGGGCATTAAAGATGCTCAACAAACTgtatgtatcaaagcacttagagttttcttattgacccttatattgaactcttttatcttgcatcaatttgtgtatcatatttctttgttctgtgcaagaa
upper sequence: AT3G10640.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0007g02300.t01 (Vitis vinifera), 5'ss of exon 3
GTATGAAGGACAACGCGACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTgta--tgtatttcttgttctcttctcttctaagaggtgttcaatgtttgaatggttgtgtatctat-taaatctgctgcag--------------------
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GTATGAAGGACAGCGTGACATGCTTTACAACCAAACATTCAACCTTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgctaatcgttgtgatgatgattcacacataca-agtatttgtgtatgtatatatgtatctatagatggttccccccattttttcaggtggtgc
upper sequence: AT3G10640.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S197_29V6.1 (Physcomitrella patens), 5'ss of exon 2
GTATGAAGGACAACGCGACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTgtatgtatttcttgttctctt----ctcttctaagaggtgttcaatgtttgaatggttgtgtatctattaaatctgctgcag--------------------
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GTGTGAGGGTCAACGGGACCAACTATTCAGTCAATCTTTCAACTTGGAGCAGGTTGCCTTTGCAACAGAAGGACTCAAAGATGCTCAACAAACGgtgggccttatccacttccttgcagttcgtctgt-acttgcttttcgttctaaatgcaatggacatga-acatgtggtgtgcatgctttactcccgtgtccgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19875281|gb|AU236112.1|AU236112EST: TCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACT ATGACAGCACTAAAATCTGCGAACAAGGAGTTGAAAGGAATGATGAAAACC
genomic: TCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTgtatgtattt ... tctgctgcagATGACAGCACTAAAATCTGCGAACAAGGAGTTGAAAGGAATGATGAAAACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGAAGGACAACGCGACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTgtatgtatttcttgttctcttctcttctaagaggtgttcaatgtttgaatggttgtgtatctattaaatctgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG