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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGAgtaagatattatttgagaatctaggagattgattcatattctcaaaatgtagttgcgttatggttttgttttgtgtttggcag

Basic information

species Arabidopsis thaliana
transcript AT3G10540.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g65230.1 (Oryza sativa), 5'ss of exon 3
ACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGAgtaag----atattatttgagaatctaggagattgattcatattctcaaaatgtagttgcgttatggttttgttttgtgtttggcag
| |||||||||||||| |||||||||||||| || || ||||||||     | ||  |     |  |  |    |  | |  |    |  | || |       || |       |||||  |  | ||| || ||| |||
ATATGGCGCTTGAGTCGTGTGAAGGTGGGGAGCTGTTTGACCAAATTGTTCGGgttggtgtcgtgctgctcacaatgccaacaatgcggataatttatcttgtatatttgcttcttatgcatggggttt-tgcttg-cag

upper sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 3
ACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGAgtaagatattat------ttgaga-atctaggagattgattcatattctcaaaatgtagttgcgttatggttttgttttgtgtttggcag----------
||||||| ||||| || ||||||||||| |||||||| || ||||| ||||| ||||| ||  ||      |  ||  | |||| | ||    |    |    | | | |  |||    |   ||   |    |||   | ||          
ACATGGCTCTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGgtaagctaacataaaacttcaaggcacctagaacatgtgctggggtataaatagtttgtttggaaaaatcttacataacatgtgccgaaggtgttaggcc

upper sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 3
ACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGAgtaagatattat------ttgaga-atctaggagattgattcatattctcaaaatgtagttgcgttatggttttgttttgtgtttggcag----------
||||||| ||||| || ||||||||||| |||||||| || ||||| ||||| ||||| ||  ||      |  ||  |  ||| | ||    |    |   || ||| |  |||    |   || |      |||   | ||          
ACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGgtaagctaacataaaacttcaaggcacatagaacatgcgctggggtatacataatttgtttgaaaaaatcttatagaacatgtgctgaaggtgttagtcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070404|gb|DR366161.1|DR366161
EST:     TGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGN                         AAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTT
genomic: TGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGAgtaagatatt ... tgtttggcagAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTT