1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGAGTGATGTTGAGCTGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGgtatatatatgtttatatagcttttgatgattgtgtcttttggttgtgaaatgcagtggttgagtgttttctttgtgttccacag
species | Arabidopsis thaliana |
transcript | AT3G10530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAG ACATTGAAAGATAAGAAACTAAAGACTCAACTTGCTTCAC-AGAAAAGTTGEST: gi|19876066|gb|AU236897.1|AU236897
genomic: TGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGgtatatatat ... tgttccacagACATTGAAAGATAAGAAACTAAAGACTCAACTTGCTTCACGAGAAAAGTTG
EST: TGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAG ACATTGAAAGATAAGAAACTAAAGACTCAACTTGCTTCACGAGAAAAGTTGEST: gi|86067905|gb|DR363662.1|DR363662
genomic: TGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGgtatatatat ... tgttccacagACATTGAAAGATAAGAAACTAAAGACTCAACTTGCTTCACGAGAAAAGTTG
EST: TGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAG ACATTGAAAGATAAGAAACTAAAGACTCAACTTGCTTCACGAGAAAAGTTG
genomic: TGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGgtatatatat ... tgttccacagACATTGAAAGATAAGAAACTAAAGACTCAACTTGCTTCACGAGAAAAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGTGATGTTGAGCTGGAGACTAAAGTTAAGAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGgtatatatatgtttatatagcttttgatgattgtgtcttttggttgtgaaatgcagtggttgagtgttttctttgtgttccacag
- - - - - - - - TGGAGA
- - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA