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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTGAGGGAGGAAGGAAAGGTGGTAGTGGCTGACACAACCCTCCAATATTTAGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAGgtctgttatgttaaaaaaaaatatatatacacattaattttggctgattttgattttcgatttgaacgcattttaataaggtgtgaatgtgaaagcag

Basic information

species Arabidopsis thaliana
transcript AT3G10520.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501455|gb|HO206995.1|HO206995
EST:     ATTTAGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAG                         GTGGTGAAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAA
genomic: ATTTAGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAGgtctgttatg ... gtgaaagcagGTGGTGAAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAA
EST: gi|86080209|gb|DR375966.1|DR375966
EST:     ATTTAGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAG                         GTGGTGAAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAA
genomic: ATTTAGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAGgtctgttatg ... gtgaaagcagGTGGTGAAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAA