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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCACAGTGGGCGTGCACCAGACGGGCTTCGGACTAATTGGGTTATGCATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTGgtactgtattgtccaaattactttcgaatttggtttatctgataatttccaaaagatctcaattctttgtttgggtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G10490.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087027|gb|DR382786.1|DR382786
EST:     ACGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTG                         CAAGATGCATATGTGTTGTGTAGAGTCTT
genomic: ATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTGgtactgtatt ... ttgggtgcagCAAGATGCATATGTGTTGTGTAGAGTCTT
EST: gi|86084202|gb|DR379961.1|DR379961
EST:     ACGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTG                         CAAGATGCATATGTGTTGTGTAGAGTCTT
genomic: ATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTGgtactgtatt ... ttgggtgcagCAAGATGCATATGTGTTGTGTAGAGTCTT