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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTACAGACTCTAATACTTCAATCACTTCACTTCCAGAACCTCATGAAGATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgtatatccagattcagattaatgaggaataatcaattctatttttgacccaatagctctctaacaattcagttgatgatgttatgcatcctaaatcttatatag

Basic information

species Arabidopsis thaliana
transcript AT3G10370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G28000.1 (Glycine max), 5'ss of exon 3
CACTACAGACTCTAATACTTCAATCACTTCACTTCCAGAACCTCATGAAGATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgtatatccagattcagattaatgaggaataatcaattctatttttgacccaatagctctctaacaattcagttgatgatgttatgc-atcctaaatcttatatag
 |||||||| || || |||   || || |  ||||||||||| ||||||||||| || ||||||||| |||| || |||   || || |||||  |||| ||||       ||   |  |  |   | |  | |   | ||  ||  ||   |  || |||  |  || |  ||  ||  |||    |||| |    |  || | 
AACTACAGATTCCAACACTAGCATTACCTTTCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgatattcttgccaacacaggcaatttttaagcacaatagttttcctttt--ctttctgcc--tttaaatgcagaaattaaatgatcccatgcttattaca-

upper sequence: AT3G10370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G35170.1 (Glycine max), 5'ss of exon 3
CACTACAGACTCTAATACTTCAATCACTTCACTTCCAGAACCTCATGAAGATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgta---tatccagattcagattaatgaggaataatcaattctatttttgacccaatagctctctaacaattcagttgatgatgttatgcatcctaaatcttatatag
 |||||||| |||| ||||   || ||||  ||||||||||| ||||||||||| || ||||||||| |||| || |||  ||| || |||||  |||| |||   ||| ||     | ||   | |  | |  |  |   |||||||  |  | ||  |    || ||||    ||   |  | |          || ||      
GACTACAGATTCTAGTACTAGCATTACTTATCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCCGATTACCTTAATGTTAAAgtatgttattcatgccaatatatcttactacttttacacattatttttttctta-tattttctgaagaattggtgtggacagatcacaatgatgtgatgtt------

upper sequence: AT3G10370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G32390.1 (Glycine max), 5'ss of exon 3
CACTACAGACTCTAATACTTCAATCACTTCACTTCCAGAACCTCATGAAGATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgta---tatccagattcagattaatgaggaataatcaattctatttttgacccaatagctctctaacaattcagttgatgatgttatgcatcctaaatcttatatag
 |||||||| ||||  |||   || ||||  ||||||||||| ||||||||||| || ||||||||| |||| || |||   || || |||||  |||| |||   ||| |      | ||   | |  | |  |  |   | |||    ||  |||  |    || ||||    ||  ||    |   ||  | |   ||      
GACTACAGATTCTAGCACTAGCATTACTTATCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgttattcctgccaatatagcttactatttttacacgttttttccccccttatattttctgaagaattggtgtggagagaacaca-atgatgatgttt------

upper sequence: AT3G10370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 3
CACTACAGACTCTAATACTTCAATCACTTCACTTCCAGAACCTCATGAAGATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgtatatccagattcagattaatgaggaataatcaattctatttttgacccaatagctctctaacaattcagttgatgatgttatgcatcctaaatcttatatag---
|||||| || || || |||   |||||    ||||||||||| ||||| |||||||| ||||||||||| || || ||||| || || |||||  |||||||   |  |  |      |||  |    |  | | || ||||     |   ||    || ||  ||     |  ||| |  | |     | | || ||    |    
CACTACTGATTCCAACACTAGCATCACAATGCTTCCAGAACCGCATGAGGATGAGATCCAATTTATACTCGATGCTATCAGTGATTACCTTAATGTTAAGgttggttgatttct---ctaactaaatctcttgatttttattacatgctttatcttactttaggaac----tatatgctactgtatcatcaagatttttggaattgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125304072|gb|EL318157.1|EL318157
EST:     CGCAATCAGCGACTATCTTAACATTAAG                         GTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
genomic: CGCAATCAGCGACTATCTTAACATTAAGgtatatccag ... tcttatatagGTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
EST: gi|116483431|gb|EG526023.1|EG526023
EST:     ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAG                         GTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
genomic: ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgtatatccag ... tcttatatagGTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
EST: gi|116483425|gb|EG526017.1|EG526017
EST:     ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAG                         GTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
genomic: ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgtatatccag ... tcttatatagGTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
EST: gi|116483428|gb|EG526020.1|EG526020
EST:     ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAG                         GTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
genomic: ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgtatatccag ... tcttatatagGTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCC
EST: gi|47829202|gb|CK118886.1|CK118886
EST:     ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAG                         GTTCGACGTACTGATGTTCTTTTCG-CTTGGAGTGGGATCCGTCCATTGGC
genomic: ATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGgtatatccag ... tcttatatagGTTCGACGTACTGATGTTCTTT-CGGCTTGGAGTGGGATCCGTCCATTGGC