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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGCTTGTAGAACAGgtttgttgtagcattgtttgtacattttggtggcaattgcagctaaaatgtgtttgaaatcgtgttaatggctaccaatccaaatatatattccgtggta...

Basic information

species Arabidopsis thaliana
transcript AT3G10350.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10350.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 4
GAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGCTTGTAGAACAGgtttg---ttgtagcattgtttgtacattttggtggcaattgcagctaaaatgtgtttgaaatcgtgttaatggctaccaatccaaatatatattccgtggta
|||| |||||||||||||||| | |||| | ||||  ||||| |||||||| || ||||| || |||||||| ||||| ||||||||| ||| ||| |||||      || | |   |||    |    |    |    |||      | || | |   | |   | ||    |||   |||    | | |  |   |   | 
GAAGTCTAGGGAAGAGTTTCGAAATGCCGCCCAGAAAAATGGTGGAACTGGAGTCAAAGACTTCATGGATGGCATGGGTCTTGGAATGATTGCAGACCAGgtaaagatttattgagatgtcatcaatcatcatcgtttcttgttatgtatatct-tccaagaggatattttatgctgtgaattttgaca-aggtgatgaatt-

upper sequence: AT3G10350.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 4
GAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGCTTGTAGAACAGgttt-gttgtagcattgtttgta-cattttgg--tggcaattgcagctaaaatgtgtttgaaatcgtgttaatggctaccaatccaaatatatattccgtggta--
 |||||| ||||||| || || | |||    ||||  ||||| |||||||| || |||||||| |||||||| ||||| |||||||||||||| ||||||||   | | || |  | ||| || |||| ||   ||   | |     |  | | || |  || |  |  ||| |  ||    |    | ||  | |    ||||  
AAAGGCTCGGGAAGAATTCCGCAATGCAAGTCAGAAAAATGGGGGAACTGGTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagctttatctatatttataacattgtgacttgaggactattatttta-tctgatcaaagtaattctaa-gaatagtggt----agatcaactgaagggtatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124844105|gb|EH928542.1|EH928542
EST:     TGAAAGATTTTATGGATGGTATGGGACTTGGAATGCTTGTAGAACAG                         TTGGGGGAGCTTAAACTTGGAGAATTGCTCGACACACCGCCTCCTGGATTG
genomic: TGAAAGATTTTATGGATGGTATGGGACTTGGAATGCTTGTAGAACAGgtttgttgta ... gttgatgaagTTGGGGGAGCTTAAACTTGGAGAATTGCTCGACACACCGCCTCCTGGATTG