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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAGgtaaaccttttaactctaaaacatctctgtcaatggatatattttaattgctatcggattttggttaactttgatcatcattacag

Basic information

species Arabidopsis thaliana
transcript AT3G09940.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125134618|gb|EL175400.1|EL175400
EST:     GCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAG                         TCAATCCGACCCTTGCAAATA
genomic: GCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAGgtaaaccttt ... atcattacagTCAATCCGACCCTTGCAAATA
EST: gi|116470475|gb|EG513067.1|EG513067
EST:     GCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAG                         TCAATCCGACCCTTGCAAATATCTATGTTTGTGCTGGAACTGGAGAAGCGA
genomic: GCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAGgtaaaccttt ... atcattacagTCAATCCGACCCTTGCAAATATCTATGTTTGTGCTGGAACTGGAGAAGCGA