1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTGAAGCCATACCTGATGGGACAGCAGGTGGCCCTAAAAGCACTAGTGCTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAGgtgattcaaatgaagtagctttgtttgtctcttgtagattgtactataatgttcggcttatctcaaaatcatatgagctgttaatctcattttctgtctacgagcaacctgaagttcaatatcactgagtgacctctattgtgaatgttag
species | Arabidopsis thaliana |
transcript | AT3G09740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAG GTGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAATEST: gi|124884582|gb|EH963484.1|EH963484
genomic: TTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAGgtgattcaaa ... tgaatgttagATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAAT
EST: CCTGATATCAAATTTAGATTCAG ATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAAEST: gi|116435937|gb|EG478529.1|EG478529
genomic: CCTGATATCAAATTT-GATTCAGgtgattcaaa ... tgaatgttagATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAA
EST: TTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAG ATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAATEST: gi|124732015|gb|EH823417.1|EH823417
genomic: TTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAGgtgattcaaa ... tgaatgttagATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAAT
EST: ATATCAAATTTGATTCAG ATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAATEST: gi|124985078|gb|EL057692.1|EL057692
genomic: ATATCAAATTTGATTCAGgtgattcaaa ... tgaatgttagATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAAT
EST: TTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAG ATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCT
genomic: TTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAGgtgattcaaa ... tgaatgttagATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAAGCCATACCTGATGGGACAGCAGGTGGCCCTAAAAGCACTAGTGCTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAGgtgattcaaatgaagtagctttgtttgtctcttgtagattgtactataatgttcggcttatctcaaaatcatatgagctgttaatctcattttctgtctacgagcaacctgaagttcaatatcactgagtgacctctattgtgaatgttag
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