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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttacattagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgttattacttattag

Basic information

species Arabidopsis thaliana
transcript AT3G09560.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G19730.1 (Glycine max), 5'ss of exon 3
TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttac-attagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgttattacttattag
 ||||| || || | ||| ||||| |||||  | ||||| ||||| ||||| ||| || |||| || |||||||| ||||| ||||||||||||||||||||||  |||   | |      ||  ||  |     |  |        | ||   ||   ||||| ||||   |  | ||||        ||| | ||  ||
AAATGTTCCCACTACTGAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAGgttt--tgacattcattgactgtctaagttcctgtattaagttatatacaatggtt--gacttttgtttgagagaaatttta-------attgcataacag

upper sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 3
TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttacattagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgtta-ttacttattag
 ||||| || || |   | ||||| |||||  | ||||| ||||| ||||| ||| || |||| || |||||||| ||||| ||||| |||||||||||||||| ||||      ||||  ||||   | | |   |   | |    ||  |   |     || | || |  |||     |   | ||| |||| ||  ||
AAATGTTCCCACTACCAAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCTACAAGGGTTCTCGGAACACAACAGgttt-ttga------catttattgatgttctaagttc---ctgtattaagtttaccagtggttggattttgtttaagagataaattttaattacataacag

upper sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G35930.1 (Glycine max), 5'ss of exon 5
TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttacattagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgttattacttattag
 ||||| ||  | |||||   ||| |||||  | ||||| ||||||||||| ||| || |||| || ||||||||  | || ||||||||||| ||||||||||| |  |  ||     | |  ||  |    | |   |   |   ||    |      ||| | || |  |  | |    ||| | ||||   |  ||
AAATGTTCCCTCTAATGAGATGATAGCATCCTTAAATCTCAAAGATGGTCAAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACGCAACAGgtttgatattcattgag--aatctaagttccatatgattatatatacaacggttaaagtgttttgcttattttagcatgaaagtt-taattatgcaacag

upper sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 2
TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttacattagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgttattacttattag--
 ||| |||| |||| ||| ||||| |||||| |||| || ||||| ||||| |||||| |||| || |||||||| || || |||||||||||||||||||| || |  ||||  |     || ||| ||  |   ||    |   |||     |   |      | | |    |||  |  |    | |  ||| | |   
AAATATCCCCACCACTGAGCAGATTGCATCTTTGAACCTAAAAGAAGGTCAAAATATGGTAACCTTCAGTTTCTCTACCAGGGTTCTTGGAACACAACAGgtctgatattggtgtctaatattcaaatttcaatttcaatatgtaaaaagtctgttggatgcctttctgtttcaactgctaaggaactttcgcttttgacag