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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGgtttgtgctcatgatcacatctgatgatttgttcctgtctgatatagttttgtaatccgatgatgccaatgatatgtgctctgtttctggtag

Basic information

species Arabidopsis thaliana
transcript AT3G09300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 3
GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGgtttgtgctcatga--tcacatctgatgatttgttcctgtctgatatagttttgtaatccgatga--tgcca--atgatatgtgc-tctgtttctggtag---
|||||||||||| |||||||||||  | |||||||||||| | ||||| ||||| || || |||||||| |||||||||||||||||||||||||| ||||||||| ||  | |  |||||| |   |    ||    | |||   | || || | ||||  ||   || ||  ||| || || | | || ||   ||||   
GAAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGgtttgtactgttaaactcacatttagagcgcagta---gcctgtgttcgtcttctcatcctgtgcattggcagaatgttacgttcatttgcttagcgtagtat

upper sequence: AT3G09300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGgtttgtgctcatgatcacatctgatgatttgttcctgtctgatatagt--tttgtaatccgatgatgc-----caatgatatgtgctctgtttctggtag---
|||||||||||| |||||||||||||| |||||||||||| | ||||| ||||| || || |||||||| |||||||||||||||||||||||||| ||||||||| || ||| ||  |  |   || || ||    | |    | |   | |  ||    | ||||      ||||  | ||  |  |||      ||    
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtact-atgttccgaatta--gacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa

upper sequence: AT3G09300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 3
GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGgtttgtgctcatgatcacat-ctga--tgatttgttcctgtctgatatagt---tttgtaatccgatgatgccaatgatatgtgctctgtttctggtag--
|||||||||||| || ||||||||||| |||||||||||| | ||||| ||||| || || |||||||| |||||||||||||||||||||||||| ||||||||| ||    || |  | ||||  |    |  |   |  | | |  |    | |  ||    | ||||    ||  || || |   ||   |   |  
GAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAGgtttgtactttgtattatgttctgaattagacttcttgagatttacactgcccatctacaactgaaggatgtgtctgcaat-tgtttgattctcgacggct

upper sequence: AT3G09300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S148_87V6.1 (Physcomitrella patens), 5'ss of exon 3
GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGgtttgtgctcatgatcacatctgatgatttgttcctgtctgatatagttttgtaatccgatgatgccaatgatatgtgctctgtttctggtag-------
||| |||||||| ||||||||||| |||||  |||| ||||||||||| ||||| || || || ||||| || ||||| | ||||||||| ||||| ||||| | |  | |   |         ||         | | ||   |   | | | |    |  |||    || |||  |   |||| |   |         
GAAAATGATGCACAAGTACATAGGTTCTGACATTACTTCAATGGTGACACTTCCAGTCATCATATTTGAGCCCATGACTACGCTTCAGAAGATGGCTGAGgtatttttttactttttttgtgcgtggccgcaaaatatttggctttaatctttgagtacaaaatgattctgctatccgtgatgttgcaaattctgtatac