Sequence
atgc intronic sequence ATGC exonic sequenceATCCATTTTCTATGGCACCGCCTAAAGCTCTCGAGACAATTGGAAAAAATTTGAGCACTCAGTATGAGAGATGGCAACCCAGGgtgacaatttttttccctgcaccctatcattattgttttgttaagttacgcttttcttatttattttatgatttctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G08850.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 3
ATCCATTTTCTATGGCACCGCCTAAAGCTCTCGAGACAATTGGAAAAAATTTGAGCACTCAGTATGAGAGATGGCAACCCAGGgtgacaatttttttccctgca-ccctatcat--tattgttttgttaagttacgcttttcttatttattttatgat-ttctcag
|||| |||||||||||||||| || || | ||| |||||||||||| |||||||| ||||||||| ||||||||||| | |||| | | ||| | | | | |||| | |||| || | || || ||| ||| | || || || |||
ATCCTTTTTCTATGGCACCGCAAAAGGCATTGGAGTCAATTGGAAAAACTTTGAGCAGTCAGTATGAAAGATGGCAACCAAAGgtgggagtgtttaggcaggtagcattatcctcgtattaactt-tgaaattgatttttagttaaccttgttggcatgtttacag
upper sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 3
ATCCATTTTCTATGGCACCGCCTAAAGCTCTCGAGACAATTGGAAAAAATTTGAGCACTCAGTATGAGAGATGGCAACCCAGGgtgacaat-ttttttccctgcaccctatcat--tattgttttgttaagttacgcttttcttatttattttatgat-ttctcag
|||| |||||||||||||| | || || | ||| |||||||||||| |||||||| ||||||||| ||||||||||| | |||| ||| ||| | || |||| | |||| || | || || |||| ||| | || || || |||
ATCCTTTTTCTATGGCACCACAAAAGGCATTGGAGTCAATTGGAAAAACTTTGAGCAGTCAGTATGAAAGATGGCAACCAAAGgtgggaatgtttcagcagctaactttatcctcgtattaactt-tgaaattgattttttgttaaccttgttggcatgtttacag
upper sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 3
ATCCATTTTCTATGGCACCGCCTAAAGCTCTCGAGACAATTGGAAAAAATTTGAGCACTCAGTATGAGAGATGGCAACCCAGGgtgacaatttttttccctgcaccctatcatt---attgttttgttaagttacgcttttcttatttattttatgatttct-cag
|||||||||||||||| || | | ||| || |||| ||||||||||| ||||| |||||||||| || |||||||||| ||||| || || | | | | | || |||| | | | || ||| ||| | | || ||| |||
ATCCATTTTCTATGGCTCCTCAAAGAGCACTGGAGATGATTGGAAAAAACTTGAGTGCTCAGTATGAAAGGTGGCAACCCAAGgtgaggccattcttgcttcgaatttgtgttttgcattgctgtatcaatttaatttttaatccaagttgttgggatgcaagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124903823|gb|EH977903.1|EH977903EST: AGACAATTGGAAAAAATTTGAGCACTCAGTATGAGAGATGGCAACCCAGG GCCCGCTATAAGGTTCAGCTTGATCCGACAGT
genomic: AGACAATTGGAAAAAATTTGAGCACTCAGTATGAGAGATGGCAACCCAGGgtgacaattt ... gatttctcagGCCCGCTATAAGGTTCAGCTTGATCCGACAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCCATTTTCTATGGCACCGCCTAAAGCTCTCGAGACAATTGGAAAAAATTTGAGCACTCAGTATGAGAGATGGCAACCCAGGgtgacaatttttttccctgcaccctatcattattgttttgttaagttacgcttttcttatttattttatgatttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG