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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACTGAAAGGTCGTAATGCGTGGTACGGCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGGGAATGATTCAGgtactccatatatctcaatgacttcggttttaagtgttaaattagccttaaattatgtatgtttgatattgagaatttgtcgaatttgtaactttcatct...

Basic information

species Arabidopsis thaliana
transcript AT3G07690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07690.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 4
ATTACTGAAAGGTCGTAATGCGTGGTACGGCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGGGAATGATTCAGgt-actccatatatctcaatgacttcggttttaagtgttaaattagccttaaat-tatgtatgtttgatattg------agaatttgtcgaatttgtaactttcatct-------------------------------
  | ||||||||||| ||||||||||| || || |  || || || |||||||| |||| ||| ||||| ||||||||||| || ||||| ||||||||||| |   |||| | ||        |        |  |||| || |   || |   ||| | ||    ||  ||      | || |||   ||  | | || |    ||                               
TCTCCTGAAAGGTCGCAATGCGTGGTATGGGCAAATGCTAGCGAAGGGAGAACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgttatctcataaaactactcattattttccccgaaagttatatgaattttgagcgtatttttgaagaatgctggaagtcaaaacttgcaaaagatatcacatcatcctggatataacctgttcacttttcactctacag

upper sequence: AT3G07690.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g58740.2 (Oryza sativa), 5'ss of exon 3
ATTACTGAAAGGTCGTAATGCGTGGTACGGCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGGGAATGATTCAGgtac-tccatatatctcaatgacttcggttttaagtgttaaattagccttaaa--ttatgtatgtttgata-ttgagaatttgtcgaatttgtaactttcatct--
||| ||||| ||||||||||| ||||| || |||||||| || ||||| ||||| |  || || |||||||||||||| |||||||| ||||  ||||||||    || |   |||   |  ||    | | ||    | |   |    |  |  |||||   || ||||      | | ||       || | | |||  ||   
ATTGCTGAAGGGTCGTAATGCATGGTATGGGCAGAAACTAGCTAAAGGTGAACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAGgtttgcccttccgtcttggtttctgaaatatcaataactgaggaaatgatgcaccttatgatggtctgatggccatgtacttaattttgttatcattttattccag

upper sequence: AT3G07690.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os05g41590.1 (Oryza sativa), 5'ss of exon 3
ATTACTGAAAGGTCGTAATGCGTGGTACGGCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGGGAATGATTCAGgtactccatatat-ctcaatgacttcggtttta----agtgttaaattagccttaaattatgtatgtttgatattgagaatttgtcgaatttgtaactttcatct
| | ||||||||||||||||| ||||| || |||||| | || || || ||||| |  ||||||||||| ||||| ||||| ||||| || |  || |||||      ||  | || |||||  |   | ||     | |  |   |  |  ||   |   | ||           |  |||||  |   || || ||||     
ACTGCTGAAAGGTCGTAATGCATGGTATGGGCAGAAATTAGCTAAGGGTGAACTGACTCTTGAAATGGGGGACAGTATCAAGGGCAAAGGGACTATCCAGgttggtgctaccttcttaatgatgtaaatctttccatacttctgggtgtgtttttggtgccgaatagccatgtgctaagatttgctgtgattttatctttag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125060346|gb|EL129023.1|EL129023
EST:     AACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGGGAATGATTCAG                         GGGGTTTCTGCGGTGAAAGCATT
genomic: AACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGGGAATGATTCAGgtactccata ... atgttcatagGGGGTTTCTGCGGTGAAAGCATT