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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTGAGGCTGCAGGCTGGACACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttcacttcacctttagtttctcttgtgtactgttcacttttactgatgtgatgctttctgtacctaagctgatttgaacatcgtcatgaaaagc...

Basic information

species Arabidopsis thaliana
transcript AT3G07110.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163996244|gb|ES215984.1|ES215984
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGNGAAAGGAAAGAGCTCAAGCNGTTTA
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTA
EST: gi|116476045|gb|EG518637.1|EG518637
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|125162303|gb|EL189073.1|EL189073
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTANGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|116476044|gb|EG518636.1|EG518636
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|86071403|gb|DR367160.1|DR367160
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|86071400|gb|DR367157.1|DR367157
EST:     GGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCCATCA-G                         GAGCTGGAGAACA-GAGAAAGGAAA
genomic: GGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACC-ATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAA
EST: gi|163973999|gb|EL970716.1|EL970716
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCT
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCT
EST: gi|116476054|gb|EG518646.1|EG518646
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|125313689|gb|EL327774.1|EL327774
EST:     ACGACACCATCAAG                         GAGCTGGAGAACTAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAA
genomic: ACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAAC-AAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAA
EST: gi|47830930|gb|CK120614.1|CK120614
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|164023034|gb|ES065886.1|ES065886
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAG
EST: gi|86071402|gb|DR367159.1|DR367159
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAA
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAA
EST: gi|47828463|gb|CK118147.1|CK118147
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|164108134|gb|ES140014.1|ES140014
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAG
EST: gi|116476052|gb|EG518644.1|EG518644
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|164042629|gb|ES096111.1|ES096111
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAG
EST: gi|124715442|gb|EH806844.1|EH806844
EST:     GGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: GGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|164210210|gb|ES179238.1|ES179238
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGC
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGC
EST: gi|116476053|gb|EG518645.1|EG518645
EST:     TGGGTCGCCTTTTTTCTGAAGTCGGGGGGAACCACTACGACCCCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|116476043|gb|EG518635.1|EG518635
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|47828023|gb|CK117707.1|CK117707
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|47832259|gb|CK121943.1|CK121943
EST:     TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: TGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
EST: gi|125002025|gb|EL074294.1|EL074294
EST:     ACGACACCATCAAG                         GAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG
genomic: ACGACACCATCAAGgtatgcttca ... aaatgagcagGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCTTGAGGCTGCAGGCTGGACACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGgtatgcttcacttcacctttagtttctcttgtgtactgttcacttttactgatgtgatgctttctgtacctaagctgatttgaacatcgtcatgaaaagc

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA