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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCTTGCTTATAAGTGGAGGCAAAAGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGgtaagttctttttatatagaatttcatgaaaaattgaaagtcggaattgagtaacacatttttttgttacag

Basic information

species Arabidopsis thaliana
transcript AT3G06370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
TGATCTTGCTTATAAGTGGAGGCAAAAGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGgtaagttc-------------tttttatatagaatttcatgaaaa------attgaaagtcggaattgagtaacacatttttttgttacag----------
| || ||| |||  | |||||| ||||||||    || ||||| || ||||||||||| ||||| ||||||||||||||||| || || ||||| || |||| |||||              |||| |||    |||| |    |      ||| | |  |  || ||  ||| | |  ||    |||             
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactactcttgcttcttttttattatttttcttatttagctttcatttacatgctaaactgcataatataagttgc-attatgatttgttggaa

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 2
TGATCTTGCTTATAAGTGGAGGCAAAAGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGgtaagttctttttatatagaatttcatgaaaaattgaaagtcggaattgagtaacacatttttttgttacag---------------------------------
| || ||| |||  |  ||||| ||||||||    ||  | || || ||||||||||| ||||| ||||| ||||||||||| || || ||||| || |||| |||||  ||    ||   ||| ||      ||   | || |  || | | |||   ||   ||  | |                                  
TTATATTGTTTACCACGGGAGGAAAAAGCTCTCATATATTAGTTTTCAGTGAAGATCTTTTCTTCATTTACCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcacttctcttaattttttattt----ttcttattcagctttcaattacatgcttaactgc-ataatttaagttgcattatgattttgatttgttagaa

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 3
TGATCTTGCTTATAAGTGGAGGCAAAAGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGgtaagtt---ctttttatatagaatttcatgaaaaattgaaagtcggaattg--agtaacacatttttttgtta---cag--------------------
| ||  | || |  |   |||| |||||||||   ||| | || || ||||||||||| ||||||||||||||||||||||| || || || || || |||||||||    || |||     || |  ||   ||  |     |||  |||   |  ||   |||  ||| ||    |||                    
TTATTCTACTAACCACCCGAGGAAAAAGCTCACATATTTTAGTATTCAGTGAAGATCTTTTCTTTATTTATCTTCTTCCACCTATCATTTTTAATGCTGGgtaagttggatttcttaatgcaaactcgatttgaatattttgttcgtcattatcatcaatggattcatttatttatccagagcagttagatgcttattct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876337|gb|AU237168.1|AU237168
EST:     GAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGG                         GTTTCAGGTTGAGAAGAAGCAATTTTTTCGCAACTTCATGACCATTATGTT
genomic: GAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGgtaagttctt ... tttgttacagGTTTCAGGTTAAGAAGAAGCAATTTTTTCGCAACTTCATGACCATTATGTT