1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCATGTACCTCTATTTCCCGTGTGGAATCATTAGAGGTGTCCTCTCCAACTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACATgtgagttcacagcttgctttgcttgttttcgaaattcttatattctttcactttcttctatattctcaaaatcacacattggagggaagaaagatagaaaattatttcaaatattgcttattacctgtcattataagttgcttcagttcggtaactatccttgtcatgtcctcacag
species | Arabidopsis thaliana |
transcript | AT3G05000.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACAT GCTCTTTCGTGATTCGGGTCAAGGCTTGATTCTGCATTTAGCTCGAGTACTEST: gi|125190613|gb|EL205567.1|EL205567
genomic: CTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACATgtgagttcac ... gtcctcacagGCTCTTTCGTGATTCGGGTCAAGGCTTGATTCTGCATTTAGCTCGAGTACT
EST: CTT-GGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACAT GCTCTTTCGTGATTCGGGTEST: gi|124792233|gb|EH881912.1|EH881912
genomic: CTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACATgtgagttcac ... gtcctcacagGCTCTTTCGTGATTCGGGT
EST: CTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACAT GCTCTTTCGTGATTCGGGTCAAGGCTTGATTCTGCATTTAGEST: gi|124889377|gb|EH968279.1|EH968279
genomic: CTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACATgtgagttcac ... gtcctcacagGCTCTTTCGTGATTCGGGTCAAGGCTTGATTCTGCATTTAG
EST: CTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACAT GCTCTTTCGTGATTCGGGTCAAGGCTTGATTCTGCATTTAG
genomic: CTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACATgtgagttcac ... gtcctcacagGCTCTTTCGTGATTCGGGTCAAGGCTTGATTCTGCATTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCATGTACCTCTATTTCCCGTGTGGAATCATTAGAGGTGTCCTCTCCAACTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACATgtgagttcacagcttgctttgcttgttttcgaaattcttatattctttcactttcttctatattctcaaaatcacacattggagggaagaaagatagaaaattatttcaaatattgcttattacctgtcattataagttgcttcagttcggtaactatccttgtcatgtcctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT