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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatacttttctgtcgttggttttagtttatctttaacgataacttcatttatggatacag

Basic information

species Arabidopsis thaliana
transcript AT3G04910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G43210.1 (Glycine max), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatactttt-ctgtcgttggttttagtttatctttaacgataacttcatttatggatacag-------------------------------------------------
| || |  | ||| |||||||| |||||||||||||| ||||| || ||  |||||||||| || || |||||| ||||||||||||| ||| | ||||||| || | |     |   ||  ||||| |      |   | |  | | | | | |  || |     ||| ||  |                                                     
AGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAgtgagttccctccattttcaaccttttgccactcctctatattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G37180.1 (Glycine max), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctc--ttgtaa--acatacttttctgtc----gttggttttagtttatctttaacgataacttcatttatggatacag--------------------------------------
| || |  ||||| ||||| ||||||||||||||||||||||| || ||| | || ||||| ||||| |||||| ||||||| || || ||  | || ||||||| |  |   ||| ||  ||||  |||||||||     ||  |||| ||  || ||  |   |   |   |  || | | |                                        
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAgtaagttctttagttgcaactacattattttctgtccaccattcatttttgtgcattttagatcttgtatagttgaattggttcttcttctttctgatcttcacttgttttaattgtgaaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctc--ttgtaaacatact-tttctgt----cgttggttttagtttatctttaacgataacttcatttatggatacag--------------------------------------
| || |  ||||| ||||| ||||||||||||||||||||||| || ||| | || ||||| ||||| |||||| ||||||| || || ||  | |||||||||| |  ||  ||| ||  | | | |||||||    | ||   ||| ||   | ||  |   |   |   |  || | | |                                        
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G40550.1 (Glycine max), 5'ss of exon 1
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatacttttctgtcgttggttttagtttatctttaac----gataacttcatttatggatacag---------------------------------
                           | |||||||| ||||| || ||| |||||||||| || || |||||| ||||||||||||||||| | ||||||| || | |     |   ||| ||| | | |   || |  |  |  || || | |    || || ||  |||||   |                                     
---------------------------CATCTTGGGTTGATACAGCAAATAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccctccattttcatccttat-tatatatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaag---------attctcttgtaaacatacttt-tctgtcgttgg--ttttagtttatctttaacgataacttcatttatggatacag-----------
|||| || ||||| ||||| ||||| ||||||||||| ||||| || ||| | || |||||||| ||||||||  ||||||||||||| ||  | || |||||||         ||| ||| || |   || | | |  |||||||   ||||      | |  |  | |    |   || |  ||               
AACACAATAACATTATGAAGTTCTATACTTCTTGGGTTGATACTGCTAATAGGAACATCAATTTTGTCACTGAGATGTTCACTTCTGGGACTCTCAGGCAgtaagtatcctcgaattttctggtcattttagtatgtgggtcgttgagatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g03380.t01 (Vitis vinifera), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattc-------tcttgtaaacatacttttctgtcgttggttttagtttatctttaacgataacttcatttatggatacag-----------------------------------------------------
|||| || ||||||||||||||||||||||| ||||| ||| | || ||  | || || ||||| || || ||  ||||||| || || ||  | ||||||||||  ||       |    | |  ||   |  || |  ||  ||||  |  || | |   |||    | || |  | ||   |                                                     
AACACAACAACATCATGAAATTCTACACTTCCTGGGTTGATCCTGCAAACAGGAACATTAATTTTGTGACAGAGATGTTCACCTCCGGTACTCTTAGACAgtaagtatcatacaagttccatgattatgaatgcctttttttttttttgttcaatttctcttgattttctgatctgggcatgttgagaatttgtgtaaattctgtgagcaattttcattttcatttattttgtggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164201985|gb|ES094931.1|ES094931
EST:     CGAAATACCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACA                         ATATAGACTCAGACATAAGAGA
genomic: CGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattct ... atggatacagATATAGACTCAGACATAAGAGA