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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatacttttctgtcgttggttttagtttatctttaacgataacttcatttatggatacag

Basic information

species Arabidopsis thaliana
transcript AT3G04910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G43210.1 (Glycine max), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatactttt-ctgtcgttggttttagtttatctttaacgataacttcatttatggatacag-------------------------------------------------
| || | | ||| |||||||| |||||||||||||| ||||| || || |||||||||| || || |||||| ||||||||||||| ||| | ||||||| || | | | || ||||| | | | | | | | | | | || | ||| || |
AGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAgtgagttccctccattttcaaccttttgccactcctctatattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G37180.1 (Glycine max), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctc--ttgtaa--acatacttttctgtc----gttggttttagtttatctttaacgataacttcatttatggatacag--------------------------------------
| || | ||||| ||||| ||||||||||||||||||||||| || ||| | || ||||| ||||| |||||| ||||||| || || || | || ||||||| | | ||| || |||| ||||||||| || |||| || || || | | | | || | | |
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAgtaagttctttagttgcaactacattattttctgtccaccattcatttttgtgcattttagatcttgtatagttgaattggttcttcttctttctgatcttcacttgttttaattgtgaaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctc--ttgtaaacatact-tttctgt----cgttggttttagtttatctttaacgataacttcatttatggatacag--------------------------------------
| || | ||||| ||||| ||||||||||||||||||||||| || ||| | || ||||| ||||| |||||| ||||||| || || || | |||||||||| | || ||| || | | | ||||||| | || ||| || | || | | | | || | | |
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G40550.1 (Glycine max), 5'ss of exon 1
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatacttttctgtcgttggttttagtttatctttaac----gataacttcatttatggatacag---------------------------------
| |||||||| ||||| || ||| |||||||||| || || |||||| ||||||||||||||||| | ||||||| || | | | ||| ||| | | | || | | | || || | | || || || ||||| |
---------------------------CATCTTGGGTTGATACAGCAAATAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccctccattttcatccttat-tatatatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaag---------attctcttgtaaacatacttt-tctgtcgttgg--ttttagtttatctttaacgataacttcatttatggatacag-----------
|||| || ||||| ||||| ||||| ||||||||||| ||||| || ||| | || |||||||| |||||||| ||||||||||||| || | || ||||||| ||| ||| || | || | | | ||||||| |||| | | | | | | || | ||
AACACAATAACATTATGAAGTTCTATACTTCTTGGGTTGATACTGCTAATAGGAACATCAATTTTGTCACTGAGATGTTCACTTCTGGGACTCTCAGGCAgtaagtatcctcgaattttctggtcattttagtatgtgggtcgttgagatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatag

upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g03380.t01 (Vitis vinifera), 5'ss of exon 3
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattc-------tcttgtaaacatacttttctgtcgttggttttagtttatctttaacgataacttcatttatggatacag-----------------------------------------------------
|||| || ||||||||||||||||||||||| ||||| ||| | || || | || || ||||| || || || ||||||| || || || | |||||||||| || | | | || | || | || |||| | || | | ||| | || | | || |
AACACAACAACATCATGAAATTCTACACTTCCTGGGTTGATCCTGCAAACAGGAACATTAATTTTGTGACAGAGATGTTCACCTCCGGTACTCTTAGACAgtaagtatcatacaagttccatgattatgaatgcctttttttttttttgttcaatttctcttgattttctgatctgggcatgttgagaatttgtgtaaattctgtgagcaattttcattttcatttattttgtggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164201985|gb|ES094931.1|ES094931
EST:     CGAAATACCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACA                         ATATAGACTCAGACATAAGAGA
genomic: CGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattct ... atggatacagATATAGACTCAGACATAAGAGA